RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 PTPN23Q9H3S7 1636 aa2.41□□□□□ -2.02
CD44-212ENST00000524922 EIF2AK4Q9P2K8 1649 aaKnown RBP2.41□□□□□ -2.02
CD44-212ENST00000524922 LMTK2Q8IWU2 1503 aa2.41□□□□□ -2.02
CD44-212ENST00000524922 SYCP2Q9BX26 1530 aa2.41□□□□□ -2.02
CD44-212ENST00000524922 PTCH1Q13635 1447 aa2.41□□□□□ -2.02
CD44-212ENST00000524922 CASKIN1Q8WXD9 1431 aa2.41□□□□□ -2.02
CD44-212ENST00000524922 SPAG9O60271 1321 aaKnown RBP2.41□□□□□ -2.02
CD44-212ENST00000524922 UTRNP46939 3433 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 ERVK-7P63135 1459 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 BCL9LQ86UU0 1499 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 RALGAPBQ86X10 1494 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 MBD5Q9P267 1494 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 MSH6P52701 1360 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 PARD3Q8TEW0 1356 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 TMEM2Q9UHN6 1383 aa2.4□□□□□ -2.02
CD44-212ENST00000524922 DNAJC9-AS1A6NH13 148 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 K7ESF4 209 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 PROM1O43490 865 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 ERN1O75460 977 aaKnown RBP2.4□□□□□ -2.03
CD44-212ENST00000524922 C1RP00736 705 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 POMCP01189 267 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 FCER1AP12319 257 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 ATP5JP18859 108 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 STRN3Q13033 797 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 GEN1Q17RS7 908 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 MUM1L1Q5H9M0 696 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 TOR2AQ5JU69 321 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 ZNF529Q6P280 563 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 UBE3BQ7Z3V4 1068 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 HDGFL2Q7Z4V5 671 aaPredicted RBP2.4□□□□□ -2.03
CD44-212ENST00000524922 SSH3Q8TE77 659 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 DPF1Q92782 380 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 USP7Q93009 1102 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 MARS2Q96GW9 593 aaKnown RBP2.4□□□□□ -2.03
CD44-212ENST00000524922 PHACTR3Q96KR7 559 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 TIMP4Q99727 224 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 DUSP26Q9BV47 211 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 C1QTNF7Q9BXJ2 289 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 RSAD1Q9HA92 442 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 LANCL2Q9NS86 450 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 CCM2LQ9NUG4 571 aaPredicted RBP2.4□□□□□ -2.03
CD44-212ENST00000524922 RGS12O14924 1447 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 BLMP54132 1417 aaPredicted RBP2.4□□□□□ -2.03
CD44-212ENST00000524922 TET3O43151 1660 aa2.4□□□□□ -2.03
CD44-212ENST00000524922 FYCO1Q9BQS8 1478 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 LRP6O75581 1613 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 TMEM94Q12767 1356 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ROBO1Q9Y6N7 1651 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 A0A1W2PS29 197 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 WDR27A2RRH5 827 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 PRKD3O94806 890 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 GPANK1O95872 356 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 VIL1P09327 827 aaKnown RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 CKBP12277 381 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 WT1P19544 449 aaPredicted RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 WASP42768 502 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 STAT4Q14765 748 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ERCC6LQ2NKX8 1250 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 INAVAQ3KP66 663 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 FLYWCH1Q4VC44 716 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 GJC2Q5T442 439 aaPredicted RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 SP5Q6BEB4 398 aaPredicted RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 VWA1Q6PCB0 445 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ZNF788Q6ZQV5 615 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 DDX46Q7L014 1031 aaKnown RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 CAGE1Q8TC20 777 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 NUP133Q8WUM0 1156 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 NELL1Q92832 810 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 RNF31Q96EP0 1072 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 LRIG1Q96JA1 1093 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ACE2Q9BYF1 805 aaPredicted RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 FAM126AQ9BYI3 521 aaPredicted RBP2.39□□□□□ -2.03
CD44-212ENST00000524922 C14orf119Q9NWQ9 140 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 MOCS1Q9NZB8 636 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 CTTNBP2NLQ9P2B4 639 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ADAM21Q9UKJ8 722 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 ENTPD2Q9Y5L3 495 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 CCDC141Q6ZP82 1450 aa2.39□□□□□ -2.03
CD44-212ENST00000524922 MTUS2Q5JR59 1369 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 NINLQ9Y2I6 1382 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 ADGRB3O60242 1522 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 NEXMIFQ5QGS0 1516 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 EFCAB6Q5THR3 1501 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 CLTCQ00610 1675 aaKnown RBP2.38□□□□□ -2.03
CD44-212ENST00000524922 TCRBV7S2A1N4TA0A589 114 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 CDHR4A6H8M9 788 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 GOLGA8AA7E2F4 631 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 VWC2LB2RUY7 222 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 GPR32O75388 356 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 ATRNO75882 1429 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 SBK3P0C264 359 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 RAP2AP10114 183 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 SRGNP10124 158 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 MTHFD2P13995 350 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 GSPT1P15170 499 aaKnown RBP2.38□□□□□ -2.03
CD44-212ENST00000524922 AGXTP21549 392 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 GATA3P23771 443 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 FOLR3P41439 243 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 MASP1P48740 699 aa2.38□□□□□ -2.03
CD44-212ENST00000524922 SCAND1P57086 179 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms