RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 FILIP1LQ4L180 1135 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 TIGD5Q53EQ6 642 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 SPOPLQ6IQ16 392 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 KIAA1841Q6NSI8 718 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 TRIM65Q6PJ69 517 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 GBP6Q6ZN66 633 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 CEP57Q86XR8 500 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 MICALL1Q8N3F8 863 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 AUTS2Q8WXX7 1259 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 ZNF560Q96MR9 790 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 TRIM5Q9C035 493 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 APOBEC3GQ9HC16 384 aaKnown RBP16.46■□□□□ 0.23
LSM1-203ENST00000520755 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.46■□□□□ 0.23
LSM1-203ENST00000520755 STK39Q9UEW8 545 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 AJAP1Q9UKB5 411 aaPredicted RBP16.46■□□□□ 0.23
LSM1-203ENST00000520755 MTCH2Q9Y6C9 303 aa16.46■□□□□ 0.23
LSM1-203ENST00000520755 A0A1W2PQC6 194 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 SPTLC1O15269 473 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 CBFA2T2O43439 604 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 CLSTN1O94985 981 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 EFEMP2O95967 443 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 ASS1P00966 412 aaKnown RBP16.45■□□□□ 0.22
LSM1-203ENST00000520755 URODP06132 367 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 CTSAP10619 480 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 GLUD2P49448 558 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 TAF6P49848 677 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 MRE11P49959 708 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 LILRA4P59901 499 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 TRPC3Q13507 836 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 SMC1AQ14683 1233 aaKnown RBP16.45■□□□□ 0.22
LSM1-203ENST00000520755 BMS1Q14692 1282 aaKnown RBP16.45■□□□□ 0.22
LSM1-203ENST00000520755 EXOC3L4Q17RC7 722 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 USP41Q3LFD5 358 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 FKBP15Q5T1M5 1219 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 DSTYKQ6XUX3 929 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 ARHGEF19Q8IW93 802 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 RNF168Q8IYW5 571 aaPredicted RBP16.45■□□□□ 0.22
LSM1-203ENST00000520755 MRFAP1L1Q96HT8 127 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 GANQ9H2C0 597 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 RAB20Q9NX57 234 aa16.45■□□□□ 0.22
LSM1-203ENST00000520755 MYO7AQ13402 2215 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 FSCN2O14926 492 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 NOL4O94818 638 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 ADCY5O95622 1261 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 CXCL14O95715 111 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 STAU1O95793 577 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 TKTP29401 623 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 PNPLA4P41247 253 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 NOP14P78316 857 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 SV2CQ496J9 727 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 RTP2Q5QGT7 225 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 GJB7Q6PEY0 223 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 VSTM4Q8IW00 320 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 LRRC52Q8N7C0 313 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 EHBP1Q8NDI1 1231 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 RIN2Q8WYP3 895 aaPredicted RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 SUSD3Q96L08 255 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 TTPALQ9BTX7 342 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 LSM14BQ9BX40 385 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 VRTNQ9H8Y1 702 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 NGRNQ9NPE2 291 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 MRPL17Q9NRX2 175 aaKnown RBP16.44■□□□□ 0.22
LSM1-203ENST00000520755 LMCD1Q9NZU5 365 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 PTPRDP23468 1912 aa16.44■□□□□ 0.22
LSM1-203ENST00000520755 PRRC2BQ5JSZ5 2229 aaKnown RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 HIDE1A8MVS5 230 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 KPNA7A9QM74 516 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 FGFR3P22607 806 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 AARSP49588 968 aaKnown RBP eCLIP16.43■□□□□ 0.22
LSM1-203ENST00000520755 DSG1Q02413 1049 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 MYO1EQ12965 1108 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 PTPN14Q15678 1187 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 ZNF699Q32M78 642 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 PDE12Q6L8Q7 609 aaKnown RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 PHLDB3Q6NSJ2 640 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 PRSS55Q6UWB4 352 aaPredicted RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 ADGRD2Q7Z7M1 963 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 TATDN2Q93075 761 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 HPDLQ96IR7 371 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 SENP8Q96LD8 212 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 TTYH3Q9C0H2 523 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 NSUN3Q9H649 340 aaKnown RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 PLCB1Q9NQ66 1216 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 CHST7Q9NS84 486 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 PCDHB8Q9UN66 801 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 POLIQ9UNA4 740 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 TIMM13Q9Y5L4 95 aaPredicted RBP16.43■□□□□ 0.22
LSM1-203ENST00000520755 ITIH6Q6UXX5 1313 aa16.43■□□□□ 0.22
LSM1-203ENST00000520755 PLXNA3P51805 1871 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 C2orf71A6NGG8 1288 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 M0QZQ0 153 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 ODC1P11926 461 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 POU3F3P20264 500 aaPredicted RBP16.42■□□□□ 0.22
LSM1-203ENST00000520755 PAX3P23760 479 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 ATICP31939 592 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 ASPAP45381 313 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 LRMPQ12912 555 aa16.42■□□□□ 0.22
LSM1-203ENST00000520755 CCDC85BQ15834 202 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms