RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ZNF236Q9UL36 1845 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 ADAM12O43184 909 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 ATP6V1G1O75348 118 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 ITGB3P05106 788 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PSMC1P62191 440 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 NKX3-2P78367 333 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PPP2R3AQ06190 1150 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 MAP7D1Q3KQU3 841 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PHOSPHO2Q8TCD6 241 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 BHMTQ93088 406 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PAGE5Q96GU1 130 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 C1orf112Q9NSG2 853 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 ABI2Q9NYB9 513 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 RBAKQ9NYW8 714 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 YEATS4O95619 227 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 CNPP09543 421 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 EFNA5P52803 228 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 LAMB3Q13751 1172 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PDCD2Q16342 344 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 KBTBD12Q3ZCT8 623 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 RTP2Q5QGT7 225 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 FUT10Q6P4F1 479 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 MPZL3Q6UWV2 235 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 NANOGNBQ7Z5D8 188 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 LRRC27Q9C0I9 530 aa8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 UBE2ZQ9H832 354 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-219ENST00000514096 PIK3R2O00459 728 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 N4BP3O15049 544 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 TOM1L1O75674 476 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 LAG3P18627 525 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 POLR2BP30876 1174 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 HOXC8P31273 242 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ATAD1Q8NBU5 361 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 C3orf58Q8NDZ4 430 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 IGSF21Q96ID5 467 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 UHRF1Q96T88 793 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 SEZ6LQ9BYH1 1024 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 GVINP1Q7Z2Y8 2422 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 FRMPD3Q5JV73 1810 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 GOLGA6L10A6NI86 522 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 PYGBP11216 843 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 MYCLP1P12525 358 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 TUFMP49411 452 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 MGAT5BQ3V5L5 792 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 CTXN3Q4LDR2 81 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 SWT1Q5T5J6 900 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ACBD5Q5T8D3 534 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 RNF168Q8IYW5 571 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ADAMTS19Q8TE59 1207 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 GIPC2Q8TF65 315 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 TSGA10Q9BZW7 698 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 HAPLN2Q9GZV7 340 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 PCDHA5Q9Y5H7 936 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 MICAL3Q7RTP6 2002 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 FRYLO94915 3013 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 MYO15AQ9UKN7 3530 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 PODXLO00592 558 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 PTGESO14684 152 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 HOXA2O43364 376 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 LRRN2O75325 713 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 CD72P21854 359 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 GCLMP48507 274 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 WNT7BP56706 349 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 SESN3P58005 492 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ERVK-21P61565 698 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 TRPC3Q13507 836 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 CAMK1Q14012 370 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 KLHL40Q2TBA0 621 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 SLC10A6Q3KNW5 377 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 HSP90B2PQ58FF3 399 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 LIN9Q5TKA1 542 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 C17orf50Q8WW18 174 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 UBXN4Q92575 508 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ACCSQ96QU6 501 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 DNAJC25Q9H1X3 360 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 SMOC2Q9H3U7 446 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 HCFC1R1Q9NWW0 138 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 LIMD1Q9UGP4 676 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 ADAM28Q9UKQ2 775 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 CIZ1Q9ULV3 898 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 PYCARDQ9ULZ3 195 aa8.45□□□□□ -1.06
LIMCH1-219ENST00000514096 FAM186AA6NE01 2351 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 SPTBN4Q9H254 2564 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 TCHHQ07283 1943 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 H3BNC9 293 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 RPN1P04843 607 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 MYL4P12829 197 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 RAP1GAPP47736 663 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 HYAL1Q12794 435 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 TMEM119Q4V9L6 283 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 ARHGAP29Q52LW3 1261 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 FAM26DQ5JW98 314 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 THEMIS2Q5TEJ8 643 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 SPOPLQ6IQ16 392 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 ZNF720Q7Z2F6 126 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 SLC7A14Q8TBB6 771 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 CORO1BQ9BR76 489 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 COLEC11Q9BWP8 271 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 CCSER1Q9C0I3 900 aa8.44□□□□□ -1.06
LIMCH1-219ENST00000514096 NSUN3Q9H649 340 aaKnown RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms