RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ARHGDIBP52566 201 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 IST1P53990 364 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PSMC5P62195 406 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TRAF3Q13114 568 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 MTX1Q13505 466 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PTGISQ16647 500 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CYP51A1Q16850 503 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 EIF2S3LQ2VIR3 472 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 ZNF618Q5T7W0 954 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 C20orf194Q5TEA3 1177 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ARMC6Q6NXE6 501 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CAPN12Q6ZSI9 719 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 ANKRD23Q86SG2 305 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 PRPF39Q86UA1 669 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 DIS3L2Q8IYB7 885 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 CHPFQ8IZ52 775 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SLC35F6Q8N357 371 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 LNX2Q8N448 690 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CENPTQ96BT3 561 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 RBM41Q96IZ5 413 aaKnown RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 JMJD4Q9H9V9 463 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AS3MTQ9HBK9 375 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CYP26B1Q9NR63 512 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TBC1D14Q9P2M4 693 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GABBR1Q9UBS5 961 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CHORDC1Q9UHD1 332 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 MOSPD1Q9UJG1 213 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 GNPTGQ9UJJ9 305 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.74□□□□□ -1.81
USP53-205ENST00000509769 L1RE1Q9UN81 338 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CTNND2Q9UQB3 1225 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 SH3BP1Q9Y3L3 701 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 CICQ96RK0 1608 aaPredicted RBP3.74□□□□□ -1.81
USP53-205ENST00000509769 IGSF1Q8N6C5 1336 aa3.74□□□□□ -1.81
USP53-205ENST00000509769 TRIM64CA6NLI5 447 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 B8ZZF3 427 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 LOC110117498-PIK3R3F6TDL0 507 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FPGTO14772 594 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CD3EAPO15446 510 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 RGS10O43665 173 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CDH16O75309 829 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FKBP9O95302 570 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TOP3BO95985 862 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 SERPING1P05155 500 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SCP2P22307 547 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PAX3P23760 479 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FAUP35544 74 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 GRIK1P39086 918 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CDH11P55287 796 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ATP2B2Q01814 1243 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 EXOC3L4Q17RC7 722 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CAVIN4Q5BKX8 364 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 DCUN1D2Q6PH85 259 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ZNF574Q6ZN55 896 aaPredicted RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 PEG10Q86TG7 708 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 GAS2L3Q86XJ1 694 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 GALNT15Q8N3T1 639 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ATPAF2Q8N5M1 289 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TRPV1Q8NER1 839 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PIK3R3Q92569 461 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MAML1Q92585 1016 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MYDGFQ969H8 173 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CYFIP2Q96F07 1278 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 WNK4Q96J92 1243 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PHACTR1Q9C0D0 580 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CLPBQ9H078 707 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NEK6Q9HC98 313 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PCDH18Q9HCL0 1135 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TRMT13Q9NUP7 481 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 UBP1Q9NZI7 540 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MAN1B1Q9UKM7 699 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PRDM4Q9UKN5 801 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CDY2AQ9Y6F7 541 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CDY1Q9Y6F8 540 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FPGT-TNNI3KV9GXZ4 949 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 NRAPQ86VF7 1730 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 OR14I1A6ND48 311 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 TMEM88BA6NKF7 163 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FADS2P1A8MWK0 482 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 KCNJ18B7U540 433 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 PHGDHO43175 533 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 GMFGO60234 142 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 HUS1O60921 280 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 MYO1DO94832 1006 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ZNF202O95125 648 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SLC4A2P04920 1241 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CHRM1P11229 460 aaPredicted RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 PEPDP12955 493 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 LCP1P13796 627 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SLC5A1P13866 664 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 FDPSP14324 419 aaKnown RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 GSTT1P30711 240 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 CD79BP40259 229 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 SLC9A3P48764 834 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 GNG2P59768 71 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ECT2LQ008S8 904 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ORC2Q13416 577 aaPredicted RBP3.73□□□□□ -1.81
USP53-205ENST00000509769 COTL1Q14019 142 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 KCNJ12Q14500 433 aa3.73□□□□□ -1.81
USP53-205ENST00000509769 ATP2B3Q16720 1220 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms