RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TRIM43Q96BQ3 446 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 MARS2Q96GW9 593 aaKnown RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 SGCZQ96LD1 299 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 DCLRE1CQ96SD1 692 aaKnown RBP4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF518BQ9C0D4 1074 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 DEF6Q9H4E7 631 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 SMURF2Q9HAU4 748 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 COL20A1Q9P218 1284 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 FNIP2Q9P278 1114 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 AGAP1Q9UPQ3 857 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 TMX2Q9Y320 296 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 RIPOR2Q9Y4F9 1068 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 PAXBP1Q9Y5B6 917 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 XDHP47989 1333 aa4.97□□□□□ -1.61
HMGB1P28-201ENST00000507778 A0A0G2JLL6 359 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 DIRC3C9JPN6 131 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 E9PLN8 166 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 F8W8V4 182 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 M0QYG6 137 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 MYO1CO00159 1063 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 DNAJB5O75953 348 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 GRPP07492 148 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 SETSIPP0DME0 302 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 FCER1AP12319 257 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 TNFSF4P23510 183 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 APOBEC3AP31941 199 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 UCP3P55916 312 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 BTKQ06187 659 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PIGFQ07326 219 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 SLFN5Q08AF3 891 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 FAM209BQ5JX69 171 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 C10orf62Q5T681 223 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 AGAP9Q5VTM2 703 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 FAM160B1Q5W0V3 765 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 METRNLQ641Q3 311 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 XRRA1Q6P2D8 792 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 CFAP52Q8N1V2 620 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 SLC15A4Q8N697 577 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PDPRQ8NCN5 879 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 MAML1Q92585 1016 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 LOXL4Q96JB6 756 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 ZC3H10Q96K80 434 aaKnown RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 ADOQ96SZ5 270 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PNKPQ96T60 521 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 ARPC5LQ9BPX5 153 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 VKORC1Q9BQB6 163 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 CNPPD1Q9BV87 410 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 BRIP1Q9BX63 1249 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 TLR10Q9BXR5 811 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 CD248Q9HCU0 757 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PLCB1Q9NQ66 1216 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 EIF2B4Q9UI10 523 aaKnown RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PADI4Q9UM07 663 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 JAG2Q9Y219 1238 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 ATP11BQ9Y2G3 1177 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 TCAF1Q9Y4C2 921 aa4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 USP15Q9Y4E8 981 aaPredicted RBP4.96□□□□□ -1.62
HMGB1P28-201ENST00000507778 PLEKHD1A6NEE1 506 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 RECQL4O94761 1208 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 KIF20AO95235 890 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 PIM1P11309 404 aaPredicted RBP4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 SLC11A2P49281 568 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 PTTG1IPP53801 180 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 RNASE9P60153 205 aaKnown RBP4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 RPS16P62249 146 aaKnown RBP4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 TCF15Q12870 199 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 NFIXQ14938 502 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 FBLN7Q53RD9 439 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 IZUMO3Q5VZ72 239 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 ERICH6BQ5W0A0 696 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 C1orf228Q6PIY5 440 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 PPP1R32Q7Z5V6 425 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 SKAP1Q86WV1 359 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 MICU3Q86XE3 530 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 LIX1LQ8IVB5 337 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 MPP5Q8N3R9 675 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 CCDC33Q8N5R6 958 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 FAM46DQ8NEK8 389 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 CHST13Q8NET6 341 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 WWC2-AS2Q96NR7 200 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 NEU1Q99519 415 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 SMOQ99835 787 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 POLR3GLQ9BT43 218 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 BDH2Q9BUT1 245 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 RNPEPQ9H4A4 650 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 MYH16Q9H6N6 1097 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 ARFGAP3Q9NP61 516 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 A1CFQ9NQ94 594 aaKnown RBP4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 SERHLQ9NQF3 203 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 XPR1Q9UBH6 696 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 CDYLQ9Y232 598 aa4.95□□□□□ -1.62
HMGB1P28-201ENST00000507778 A0A087WWL8 130 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 KRTAP23-1A1A580 65 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 PYCARD-AS1I3L0S3 204 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 POLRMTO00411 1230 aaKnown RBP4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 APOL1O14791 398 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 NCK2O43639 380 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 EIF3JO75822 258 aaKnown RBP4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 SPATA31D3P0C874 917 aa4.94□□□□□ -1.62
HMGB1P28-201ENST00000507778 XRCC6P12956 609 aaKnown RBP eCLIP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms