RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TBC1D30Q9Y2I9 924 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 SERPINB3P29508 390 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 RANBP1P43487 201 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 MXI1P50539 228 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 RAP1GDS1P52306 607 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 MFAP3P55082 362 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 MCL1Q07820 350 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 THOC5Q13769 683 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 ARMC3Q5W041 872 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 OPTNQ96CV9 577 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 PRR11Q96HE9 360 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 HAPLN3Q96S86 360 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 QTRT2Q9H974 415 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 LMCD1Q9NZU5 365 aa18.06■□□□□ 0.48
SQSTM1-211ENST00000506690 RBBP6Q7Z6E9 1792 aaKnown RBP18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 IGLV3-22A0A075B6J6 115 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 F8W8V4 182 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 CYP3A4P08684 503 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 BMP3P12645 472 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 PIK3CAP42336 1068 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 CDK16Q00536 496 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 CLEC16AQ2KHT3 1053 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 RASIP1Q5U651 963 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 TPTE2Q6XPS3 522 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 OSBPL8Q9BZF1 889 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 VPS11Q9H270 941 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 AVENQ9NQS1 362 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 FBXO6Q9NRD1 293 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 ANGPTL2Q9UKU9 493 aa18.05■□□□□ 0.48
SQSTM1-211ENST00000506690 TISP43B9A030 160 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ALOX15BO15296 676 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ZCCHC18P0CG32 403 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 IL1R1P14778 569 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 AMPD1P23109 780 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ARFIP2P53365 341 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 MFSD14BQ5SR56 506 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 GSTA5Q7RTV2 222 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 PDCD7Q8N8D1 485 aaKnown RBP18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 FAM81BQ96LP2 452 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 TUBGCP5Q96RT8 1024 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 MANSC1Q9H8J5 431 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ZWILCHQ9H900 591 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 VPS37BQ9H9H4 285 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 MTO1Q9Y2Z2 717 aaKnown RBP18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ZNF536O15090 1300 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 ESRRAP11474 423 aaPredicted RBP18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 LIN52Q52LA3 116 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 EFHC2Q5JST6 749 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 HP1BP3Q5SSJ5 553 aaPredicted RBP18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 SLC30A10Q6XR72 485 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 C12orf56Q8IXR9 622 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 DAW1Q8N136 415 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 GLIS1Q8NBF1 620 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 AMNQ9BXJ7 453 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 OCEL1Q9H607 264 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 PHF24Q9UPV7 400 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 DAGLAQ9Y4D2 1042 aa18.04■□□□□ 0.48
SQSTM1-211ENST00000506690 WDR91A4D1P6 747 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 TM9SF1O15321 606 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 CREB3O43889 395 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 PSMD10O75832 226 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 TGDSO95455 350 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 PPP2R5CQ13362 524 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 TRAPPC3LQ5T215 181 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 FAM91A1Q658Y4 838 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 SEMA4DQ92854 862 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 CBWD1Q9BRT8 395 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 ADAM33Q9BZ11 813 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 DDX4Q9NQI0 724 aaKnown RBP18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 WRAP73Q9P2S5 460 aaPredicted RBP18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 MAGEC1O60732 1142 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 ZNF76P36508 570 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 PGM1P36871 562 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 CDK7P50613 346 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 RTP1P59025 263 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 DSG1Q02413 1049 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 CCDC62Q6P9F0 684 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 FAM196AQ6ZSG2 479 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 MCOLN2Q8IZK6 566 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 ARHGAP24Q8N264 748 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 SMC1BQ8NDV3 1235 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 HELQQ8TDG4 1101 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 TCP10LQ8TDR4 215 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 MRRFQ96E11 262 aaKnown RBP18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 NACC1Q96RE7 527 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 TMEM120AQ9BXJ8 343 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 FHDC1Q9C0D6 1143 aaPredicted RBP18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 ARHGEF4Q9NR80 690 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 FETUBQ9UGM5 382 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 COMMD3-BMI1R4GMX3 469 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 NFASCO94856 1347 aa18.03■□□□□ 0.48
SQSTM1-211ENST00000506690 PSTPIP1O43586 416 aa18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 CHMP2AO43633 222 aa18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 DLDP09622 509 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 UNGP13051 313 aaPredicted RBP18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 CRABP2P29373 138 aa18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 GEMIN4P57678 1058 aaKnown RBP18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 LSAMPQ13449 338 aa18.02■□□□□ 0.48
SQSTM1-211ENST00000506690 GRAPQ13588 217 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms