RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 K7ENM7 598 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 IGFBP6P24592 240 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 RALGPS2Q86X27 583 aaPredicted RBP22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 HS6ST3Q8IZP7 471 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 SPEM1Q8N4L4 309 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 MYCT1Q8N699 235 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 MSTO1Q9BUK6 570 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 UPF2Q9HAU5 1272 aaKnown RBP22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 PARVGQ9HBI0 331 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 OBP2AQ9NY56 170 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 DERAQ9Y315 318 aa22.83■■□□□ 1.25
SQSTM1-210ENST00000506042 VPS13AQ96RL7 3174 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 A0A1W2PRU2 124 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 CCNE1P24864 410 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 CDC25CP30307 473 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 SLC12A3P55017 1021 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 AMPD2Q01433 879 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 DUSP4Q13115 394 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 RABEP1Q15276 862 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 SEZ6Q53EL9 994 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 SLFN12LQ6IEE8 588 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 TSSK4Q6SA08 328 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 C2orf15Q8WU43 125 aaKnown RBP22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 KCNN1Q92952 543 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 FAM212AQ96EL1 285 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 PGLYRP2Q96PD5 576 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 MMTAG2Q9BU76 263 aaKnown RBP22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 ATXN3LQ9H3M9 355 aa22.82■■□□□ 1.24
SQSTM1-210ENST00000506042 TICRRQ7Z2Z1 1910 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 VIPR2P41587 438 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 CCR2P41597 374 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 AARSP49588 968 aaKnown RBP eCLIP22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 PRR23BQ6ZRT6 265 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 KCNK18Q7Z418 384 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 SYNPOQ8N3V7 929 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 TBX20Q9UMR3 447 aa22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 EP300Q09472 2414 aaPredicted RBP22.81■■□□□ 1.24
SQSTM1-210ENST00000506042 MED19A0JLT2 244 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 RETP07949 1114 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 FCHO2Q0JRZ9 810 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 TMEM132DQ14C87 1099 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 SPATA1Q5VX52 437 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 GPBP1Q86WP2 473 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 SHKBP1Q8TBC3 707 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 PSMG2Q969U7 264 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 PLIN2Q99541 437 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 ZHX3Q9H4I2 956 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 ASB7Q9H672 318 aa22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 TIMM13Q9Y5L4 95 aaPredicted RBP22.8■■□□□ 1.24
SQSTM1-210ENST00000506042 LACTBL1A8MY62 500 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 TRAK2O60296 914 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 PIGRP01833 764 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 GJA1P17302 382 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 MCM2P49736 904 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 SIM2Q14190 667 aaPredicted RBP22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 ZBTB6Q15916 424 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 CENPPQ6IPU0 288 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 DDX1Q92499 740 aaKnown RBP22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 ZSWIM3Q96MP5 696 aa22.79■■□□□ 1.24
SQSTM1-210ENST00000506042 LILRA4P59901 499 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 POU5F1Q01860 360 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 SPAG1Q07617 926 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 FZD5Q13467 585 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 IL17AQ16552 155 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 TMEM119Q4V9L6 283 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 GPR158Q5T848 1215 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 DNAJB7Q7Z6W7 309 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 LONP2Q86WA8 852 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 ARID3BQ8IVW6 561 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 KRI1Q8N9T8 703 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 NETO1Q8TDF5 533 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 SENP8Q96LD8 212 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 REEP2Q9BRK0 252 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 ZNF292O60281 2723 aa22.78■■□□□ 1.24
SQSTM1-210ENST00000506042 MTMR11A4FU01 709 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 ATG13O75143 517 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 CHRNB1P11230 501 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 GABRR2P28476 465 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 POSTNQ15063 836 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 MGAT5BQ3V5L5 792 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 CEP68Q76N32 757 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 DCP1BQ8IZD4 617 aaKnown RBP22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 SPPL2BQ8TCT7 592 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 BPIFB1Q8TDL5 484 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 ZNF560Q96MR9 790 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 PNMA5Q96PV4 448 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 SEPT5Q99719 369 aaPredicted RBP22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 C2CD2Q9Y426 696 aa22.77■■□□□ 1.24
SQSTM1-210ENST00000506042 A0A0B4J269 797 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 SLC38A8A6NNN8 435 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 SPECC1L-ADORA2AF8WAN1 911 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 MOSPD3O75425 235 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 PAPSS2O95340 614 aaPredicted RBP22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 SEC24BO95487 1268 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 OR4Q2P0C623 313 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 WEE1P30291 646 aa22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 LONP1P36776 959 aaKnown RBP22.76■■□□□ 1.23
SQSTM1-210ENST00000506042 PNPLA4P41247 253 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms