RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 PTGER3P43115 390 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 GALK1P51570 392 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 USP11P51784 963 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 CYP4F3Q08477 520 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 HDAC1Q13547 482 aaPredicted RBP13.8□□□□□ -0.2
LSM6-204ENST00000504181 Q4G0T1 1027 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 CTXN3Q4LDR2 81 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 RNF19BQ6ZMZ0 732 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 LPCAT2Q7L5N7 544 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 TTC30AQ86WT1 665 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 NOSTRINQ8IVI9 506 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 SCUBE3Q8IX30 993 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 MINDY1Q8N5J2 469 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 CCDC12Q8WUD4 166 aaPredicted RBP13.8□□□□□ -0.2
LSM6-204ENST00000504181 SMG9Q9H0W8 520 aaKnown RBP13.8□□□□□ -0.2
LSM6-204ENST00000504181 ATXN3LQ9H3M9 355 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 EBF3Q9H4W6 596 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 THG1LQ9NWX6 298 aaKnown RBP13.8□□□□□ -0.2
LSM6-204ENST00000504181 DKK4Q9UBT3 224 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 TPCN1Q9ULQ1 816 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 GDAQ9Y2T3 454 aa13.8□□□□□ -0.2
LSM6-204ENST00000504181 COL12A1Q99715 3063 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 TTLL13PA6NNM8 815 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 GOLGA8AA7E2F4 631 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 GOLGA8BA8MQT2 603 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 PYCARD-AS1I3L0S3 204 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 TNFRSF10BO14763 440 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 ZBTB43O43298 467 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 SH3BP5O60239 455 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 CDC27P30260 824 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 POU5F1BQ06416 359 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 FBXO43Q4G163 708 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 GAREM2Q75VX8 874 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 CHD1LQ86WJ1 897 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 ETNPPLQ8TBG4 499 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 RUFY2Q8WXA3 655 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 RLN3Q8WXF3 142 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 EZH1Q92800 747 aaPredicted RBP13.79□□□□□ -0.2
LSM6-204ENST00000504181 UROC1Q96N76 676 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 PPP1R10Q96QC0 940 aaKnown RBP13.79□□□□□ -0.2
LSM6-204ENST00000504181 P2RY13Q9BPV8 354 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 DNAJC25Q9H1X3 360 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 PDZD7Q9H5P4 517 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 CLMPQ9H6B4 373 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 TCHHQ07283 1943 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 ANAPC1Q9H1A4 1944 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 TEX15Q9BXT5 2789 aa13.79□□□□□ -0.2
LSM6-204ENST00000504181 MYLKQ15746 1914 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 MYOFQ9NZM1 2061 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 MAP3K13O43283 966 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 P4HBP07237 508 aaKnown RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 GLRA2P23416 452 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 ITPKAP23677 461 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 GABRR2P28476 465 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 CYP4F8P98187 520 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 GFPT1Q06210 699 aaPredicted RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 MRPL58Q14197 206 aaKnown RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 TMEM132AQ24JP5 1023 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 ARHGAP15Q53QZ3 475 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 LYSMD4Q5XG99 296 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 ZNF280DQ6N043 979 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 OTUD6AQ7L8S5 288 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 RASSF3Q86WH2 238 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 MARCH9Q86YJ5 346 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 FRMD1Q8N878 549 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 MDGA1Q8NFP4 955 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 BICD2Q8TD16 824 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 TBCKQ8TEA7 893 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 CNOT6LQ96LI5 555 aaKnown RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 FNBP1Q96RU3 617 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 FAM83CQ9BQN1 747 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 LXNQ9BS40 222 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 NFKBIZQ9BYH8 718 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 BRPF3Q9ULD4 1205 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 SLC6A14Q9UN76 642 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 APOBEC2Q9Y235 224 aaKnown RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 COL5A1P20908 1838 aaPredicted RBP13.78□□□□□ -0.2
LSM6-204ENST00000504181 TMEM131Q92545 1883 aa13.78□□□□□ -0.2
LSM6-204ENST00000504181 SYN3O14994 580 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 N4BP3O15049 544 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 ARSAP15289 507 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 ITPKBP27987 946 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 EPHB3P54753 998 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 SOX4Q06945 474 aaPredicted RBP13.77□□□□□ -0.21
LSM6-204ENST00000504181 DUOXA1Q1HG43 343 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 TOGARAM2Q6ZUX3 1019 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 SLCO6A1Q86UG4 719 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 C4orf19Q8IY42 314 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 PGLYRP2Q96PD5 576 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 POLMQ9NP87 494 aaPredicted RBP13.77□□□□□ -0.21
LSM6-204ENST00000504181 PILRBQ9UKJ0 227 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 USP20Q9Y2K6 914 aa13.77□□□□□ -0.21
LSM6-204ENST00000504181 TP53BP1Q12888 1972 aaPredicted RBP13.76□□□□□ -0.21
LSM6-204ENST00000504181 LRRIQ4A6NIV6 560 aa13.76□□□□□ -0.21
LSM6-204ENST00000504181 CAPN9O14815 690 aa13.76□□□□□ -0.21
LSM6-204ENST00000504181 VNN2O95498 520 aa13.76□□□□□ -0.21
LSM6-204ENST00000504181 ARL2P36404 184 aa13.76□□□□□ -0.21
LSM6-204ENST00000504181 P2RY2P41231 377 aa13.76□□□□□ -0.21
LSM6-204ENST00000504181 AMPD2Q01433 879 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms