RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 LMAN1LQ9HAT1 526 aa13.74□□□□□ -0.21
SKA1-205ENST00000494518 PRMT8Q9NR22 394 aaPredicted RBP13.74□□□□□ -0.21
SKA1-205ENST00000494518 LARSQ9P2J5 1176 aaKnown RBP13.74□□□□□ -0.21
SKA1-205ENST00000494518 KIF3AQ9Y496 699 aa13.74□□□□□ -0.21
SKA1-205ENST00000494518 OBSL1O75147 1896 aa13.74□□□□□ -0.21
SKA1-205ENST00000494518 SPAG17Q6Q759 2223 aa13.74□□□□□ -0.21
SKA1-205ENST00000494518 CACNA1BQ00975 2339 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 SLC38A8A6NNN8 435 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 TISP43B9A030 160 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 TULP1O00294 542 aaPredicted RBP13.73□□□□□ -0.21
SKA1-205ENST00000494518 MAN2B1O00754 1011 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 ZNF263O14978 683 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 MICAL2O94851 1124 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 KRT18P05783 430 aaKnown RBP13.73□□□□□ -0.21
SKA1-205ENST00000494518 NFICP08651 508 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 CCNE1P24864 410 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 EPHA5P54756 1037 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 GRIN1Q05586 938 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 MCM6Q14566 821 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 KARSQ15046 597 aaKnown RBP13.73□□□□□ -0.21
SKA1-205ENST00000494518 ZBTB6Q15916 424 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 OVOS1Q6IE37 1185 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 JADE1Q6IE81 842 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 SLC39A4Q6P5W5 647 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 YAF2Q8IY57 180 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 ZNF687Q8N1G0 1237 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 ATAD1Q8NBU5 361 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 ZBTB44Q8NCP5 570 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 TMX3Q96JJ7 454 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 MSTO1Q9BUK6 570 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 CHRDQ9H2X0 955 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 RPF1Q9H9Y2 349 aaKnown RBP13.73□□□□□ -0.21
SKA1-205ENST00000494518 PLEKHA5Q9HAU0 1116 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 RBM12Q9NTZ6 932 aaKnown RBP13.73□□□□□ -0.21
SKA1-205ENST00000494518 TBX20Q9UMR3 447 aa13.73□□□□□ -0.21
SKA1-205ENST00000494518 CNOT1A5YKK6 2376 aaKnown RBP13.72□□□□□ -0.21
SKA1-205ENST00000494518 MTMR11A4FU01 709 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 OGTO15294 1046 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 FAM189A1O60320 539 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 OAZ2O95190 189 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 CYP3A5P20815 502 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 NMT1P30419 496 aaKnown RBP13.72□□□□□ -0.21
SKA1-205ENST00000494518 AARSP49588 968 aaKnown RBP eCLIP13.72□□□□□ -0.21
SKA1-205ENST00000494518 EPHB3P54753 998 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 SATB1Q01826 763 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 PUM1Q14671 1186 aaKnown RBP eCLIP13.72□□□□□ -0.21
SKA1-205ENST00000494518 RABEP1Q15276 862 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 MFSD6LQ8IWD5 586 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 LEMD2Q8NC56 503 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 BEST2Q8NFU1 509 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 RASSF8Q8NHQ8 419 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 CSGALNACT1Q8TDX6 532 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 DEPDC1BQ8WUY9 529 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 CALML4Q96GE6 196 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 ZFYVE19Q96K21 471 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 SENP8Q96LD8 212 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 DCBLD2Q96PD2 775 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 LPIN3Q9BQK8 851 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 LRRC3Q9BY71 257 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 IKZF4Q9H2S9 585 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 BLOC1S4Q9NUP1 217 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 KCND2Q9NZV8 630 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 KCNG1Q9UIX4 513 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 USP18Q9UMW8 372 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 EPG5Q9HCE0 2579 aa13.72□□□□□ -0.21
SKA1-205ENST00000494518 ACACBO00763 2458 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 OR6C75A6NL08 312 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ANKRD63C9JTQ0 380 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 H0YCG3 227 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 XPOTO43592 962 aaKnown RBP13.71□□□□□ -0.21
SKA1-205ENST00000494518 LILRB5O75023 590 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ODC1P11926 461 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 TDGF1P13385 188 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 PLCG1P19174 1290 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 GABRR2P28476 465 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 UBA7P41226 1012 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ALDH1A3P47895 512 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ACOT2P49753 483 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 KPNA1P52294 538 aaPredicted RBP13.71□□□□□ -0.21
SKA1-205ENST00000494518 GPR17Q13304 367 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 PLD1Q13393 1074 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 GAS6Q14393 721 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ZC2HC1CQ53FD0 456 aaPredicted RBP13.71□□□□□ -0.21
SKA1-205ENST00000494518 ARL6IP4Q66PJ3 421 aaKnown RBP13.71□□□□□ -0.21
SKA1-205ENST00000494518 CENPPQ6IPU0 288 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 OR10T2Q8NGX3 314 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 FAM200AQ8TCP9 573 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 NELL1Q92832 810 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 LRRC3BQ96PB8 259 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 SEPT5Q99719 369 aaPredicted RBP13.71□□□□□ -0.21
SKA1-205ENST00000494518 EPC1Q9H2F5 836 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ATXN3LQ9H3M9 355 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 PARVGQ9HBI0 331 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 ODF2LQ9ULJ1 636 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 MAFFQ9ULX9 164 aa13.71□□□□□ -0.21
SKA1-205ENST00000494518 A0A0B4J269 797 aa13.7□□□□□ -0.22
SKA1-205ENST00000494518 ARNTLO00327 626 aa13.7□□□□□ -0.22
SKA1-205ENST00000494518 TRAK2O60296 914 aa13.7□□□□□ -0.22
SKA1-205ENST00000494518 TBCAO75347 108 aaKnown RBP13.7□□□□□ -0.22
SKA1-205ENST00000494518 CHRNB1P11230 501 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms