RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 JKAMPQ9P055 326 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CFAP97Q9P2B7 532 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 USP25Q9UHP3 1055 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 FEZ2Q9UHY8 353 aaPredicted RBP2.78□□□□□ -1.96
HMGB1-208ENST00000490788 KCNE5Q9UJ90 142 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 ZNF180Q9UJW8 692 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CDYLQ9Y232 598 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 C3P01024 1663 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 NWD1Q149M9 1564 aa2.78□□□□□ -1.96
HMGB1-208ENST00000490788 CDK13Q14004 1512 aaKnown RBP2.78□□□□□ -1.97
HMGB1-208ENST00000490788 ABCA10Q8WWZ4 1543 aa2.78□□□□□ -1.97
HMGB1-208ENST00000490788 TCOF1Q13428 1488 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NEO1Q92859 1461 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 RAPGEF2Q9Y4G8 1499 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SIGLEC1Q9BZZ2 1709 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TRGV11A0A075B6L2 103 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ORC4O43929 436 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 LPXNO60711 386 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PPFIA2O75334 1257 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 OFD1O75665 1012 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 GCP02774 474 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 FTLP02792 175 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ANXA1P04083 346 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 S100BP04271 92 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 GNAI2P04899 355 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 FTH1P19P0C7X4 201 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PF4V1P10720 104 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 MALP21145 153 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 FDXRP22570 491 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 EDNRBP24530 442 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 AKAP5P24588 427 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 KRTAP5-9P26371 169 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 CYP2C19P33261 490 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PTTG1IPP53801 180 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF280AP59817 542 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NOMO3P69849 1222 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PURAQ00577 322 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 OCA2Q04671 838 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TLE1Q04724 770 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 FPGSQ05932 587 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PIN1Q13526 163 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TP53BP2Q13625 1128 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TTF1Q15361 905 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PGS1Q32NB8 556 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NOMO2Q5JPE7 1267 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 IFIT1BQ5T764 474 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SLC4A10Q6U841 1118 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF365Q70YC5 407 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 RHOUQ7L0Q8 258 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ZNF627Q7L945 461 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 CLNKQ7Z7G1 428 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 VRK3Q8IV63 474 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 GRAMD1CQ8IYS0 662 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 RPUSD2Q8IZ73 545 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 CAMKK1Q8N5S9 505 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SLC17A8Q8NDX2 589 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 IL17RDQ8NFM7 739 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NSUN6Q8TEA1 469 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PTCD3Q96EY7 689 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 BOD1Q96IK1 185 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 MRGPRX4Q96LA9 322 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PUS7Q96PZ0 661 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NEU1Q99519 415 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NUP88Q99567 741 aaPredicted RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SMOQ99835 787 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 CNNM1Q9NRU3 951 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 LMBRD1Q9NUN5 540 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SIDT1Q9NXL6 827 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 ABCF2Q9UG63 623 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TCEAL9Q9UHQ7 104 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 SERPINB13Q9UIV8 391 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PACSIN3Q9UKS6 424 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 NEU2Q9Y3R4 380 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PCDHB1Q9Y5F3 818 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 PCDHA3Q9Y5H8 950 aa2.77□□□□□ -1.97
HMGB1-208ENST00000490788 TOP2AP11388 1531 aaKnown RBP2.77□□□□□ -1.97
HMGB1-208ENST00000490788 C9orf84Q5VXU9 1444 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 NINLQ9Y2I6 1382 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 CAMTA1Q9Y6Y1 1673 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PIPSLA2A3N6 862 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 MYADML2A6NDP7 307 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 H3BUI4 141 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 WNT10BO00744 389 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 TOR1BO14657 336 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 FOXN1O15353 648 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 MARCH6O60337 910 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 SLC43A1O75387 559 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PRSS23O95084 383 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ZRANB2O95218 330 aaKnown RBP eCLIP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 SPDEFO95238 335 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 POU2F2P09086 479 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 U2AF1L5P0DN76 240 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 FCER1AP12319 257 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 ZEB1P37275 1124 aaPredicted RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PIK3CGP48736 1102 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 EPHB1P54762 984 aa2.76□□□□□ -1.97
HMGB1-208ENST00000490788 RPS7P62081 194 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 PSMC1P62191 440 aaKnown RBP2.76□□□□□ -1.97
HMGB1-208ENST00000490788 U2AF1Q01081 240 aaKnown RBP eCLIP2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms