RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 IL18RAPO95256 599 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 FTLP02792 175 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 ABCB4P21439 1286 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 NOP2P46087 812 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 AARSP49588 968 aaKnown RBP eCLIP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 PDE6CP51160 858 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 CRYBB1P53674 252 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 MYL6P60660 151 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 MRPS6P82932 125 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 CDC42EP1Q00587 391 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 CCDC181Q5TID7 509 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 SRLQ86TD4 932 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 SESTD1Q86VW0 696 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 ARRDC4Q8NCT1 418 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 AENQ8WTP8 325 aaKnown RBP12.99□□□□□ -0.33
HDAC6-230ENST00000488543 MED4Q9NPJ6 270 aa12.99□□□□□ -0.33
HDAC6-230ENST00000488543 TARSL2A2RTX5 802 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 LACTBL1A8MY62 500 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 RTN2O75298 545 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 GZMAP12544 262 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TCP1P17987 556 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TUBB4BP68371 445 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TFAMQ00059 246 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 IFI16Q16666 785 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 MAP9Q49MG5 647 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 SLC35G2Q8TBE7 412 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 CTNNBL1Q8WYA6 563 aaPredicted RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 ACBD3Q9H3P7 528 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 OSGEPQ9NPF4 335 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 NOD1Q9Y239 953 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 STXBP5LQ9Y2K9 1186 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TRIP11Q15643 1979 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 GOLGA6BA6NDN3 693 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 CABYRO75952 493 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 NPTXRO95502 500 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 NFICP08651 508 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 HSPA8P11142 646 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 POU5F1Q01860 360 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 NFX1Q12986 1120 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TCEAL1Q15170 157 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 ZNF572Q7Z3I7 529 aaPredicted RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 FAM228AQ86W67 206 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 TSEN34Q9BSV6 310 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 XYLT2Q9H1B5 865 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 SIX4Q9UIU6 781 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 COG5Q9UP83 839 aa12.98□□□□□ -0.33
HDAC6-230ENST00000488543 PIN4Q9Y237 131 aaKnown RBP12.98□□□□□ -0.33
HDAC6-230ENST00000488543 FAM153BP0C7A2 387 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 TBXAS1P24557 533 aaPredicted RBP12.97□□□□□ -0.33
HDAC6-230ENST00000488543 ZNF132P52740 706 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 SLC10A6Q3KNW5 377 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 FAM153CQ494X1 144 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 CXorf38Q8TB03 319 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 ARL8AQ96BM9 186 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 AGO3Q9H9G7 860 aaKnown RBP12.97□□□□□ -0.33
HDAC6-230ENST00000488543 FAM153AQ9UHL3 310 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 PCDHB4Q9Y5E5 795 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 KBTBD13C9JR72 458 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 TNNC2P02585 160 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 TMEM191BP0C7N4 346 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 HADHBP55084 474 aaKnown RBP12.97□□□□□ -0.33
HDAC6-230ENST00000488543 CLEC16AQ2KHT3 1053 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 JADE1Q6IE81 842 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 SH2D3CQ8N5H7 860 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 GOLGA6L1Q8N7Z2 621 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 ANKRD36BP1Q96IX9 119 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 VIPAS39Q9H9C1 493 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 PCDHB2Q9Y5E7 798 aa12.97□□□□□ -0.33
HDAC6-230ENST00000488543 PDCD11Q14690 1871 aaKnown RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 KIAA0100Q14667 2235 aaKnown RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 BUB1BO60566 1050 aaPredicted RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 GLI1P08151 1106 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 SGSM1Q2NKQ1 1148 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 ZNF618Q5T7W0 954 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 KCTD16Q68DU8 428 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 RSPH3Q86UC2 560 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 C1orf127Q8N9H9 656 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 RBBP8NLQ8NC74 664 aaPredicted RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 IFT81Q8WYA0 676 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 APOL6Q9BWW8 343 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 SENP6Q9GZR1 1112 aaPredicted RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 NIF3L1Q9GZT8 377 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 RNF39Q9H2S5 420 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 NXF3Q9H4D5 531 aaKnown RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 SNTG2Q9NY99 539 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 CWC15Q9P013 229 aaKnown RBP12.96□□□□□ -0.33
HDAC6-230ENST00000488543 ST3GAL5Q9UNP4 418 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 PHF24Q9UPV7 400 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 TRPV2Q9Y5S1 764 aa12.96□□□□□ -0.33
HDAC6-230ENST00000488543 GOLGA6CA6NDK9 693 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 M0QZ92 97 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 KIF4AO95239 1232 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 GOLGA6DP0CG33 693 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 UNGP13051 313 aaPredicted RBP12.96□□□□□ -0.34
HDAC6-230ENST00000488543 AKAP5P24588 427 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 CARSP49589 748 aaKnown RBP12.96□□□□□ -0.34
HDAC6-230ENST00000488543 GUCY2FP51841 1108 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 ATN1P54259 1190 aaPredicted RBP12.96□□□□□ -0.34
HDAC6-230ENST00000488543 BPIFB4P59827 614 aa12.96□□□□□ -0.34
HDAC6-230ENST00000488543 GPC5P78333 572 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms