RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FAM212AQ96EL1 285 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 RBM15Q96T37 977 aaKnown RBP eCLIP19.02■□□□□ 0.642e-11■■□□□ 14.4
VIM-206ENST00000487938 DHX33Q9H6R0 707 aaKnown RBP19.02■□□□□ 0.64
VIM-206ENST00000487938 AS3MTQ9HBK9 375 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 SLC12A4Q9UP95 1085 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 MAFBQ9Y5Q3 323 aaPredicted RBP19.02■□□□□ 0.64
VIM-206ENST00000487938 GJA3Q9Y6H8 435 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 SCINQ9Y6U3 715 aa19.02■□□□□ 0.64
VIM-206ENST00000487938 IBSPP21815 317 aaPredicted RBP19.02■□□□□ 0.63
VIM-206ENST00000487938 TNFSF9P41273 254 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 MAGEA4P43358 317 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 NAMPTP43490 491 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 CNTN2Q02246 1040 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 CKAP2Q8WWK9 683 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 ADAMTS5Q9UNA0 930 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 AGAP1Q9UPQ3 857 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 ZNF148Q9UQR1 794 aa19.02■□□□□ 0.63
VIM-206ENST00000487938 USP15Q9Y4E8 981 aaPredicted RBP19.02■□□□□ 0.63
VIM-206ENST00000487938 F8VP50 259 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 TCEA3O75764 348 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 LDHAP00338 332 aaKnown RBP19.01■□□□□ 0.63
VIM-206ENST00000487938 GMPSP49915 693 aaPredicted RBP19.01■□□□□ 0.63
VIM-206ENST00000487938 ELF3P78545 371 aaPredicted RBP19.01■□□□□ 0.63
VIM-206ENST00000487938 C1QBPQ07021 282 aaKnown RBP19.01■□□□□ 0.63
VIM-206ENST00000487938 MFSD7Q6UXD7 560 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 TBC1D1Q86TI0 1168 aaPredicted RBP19.01■□□□□ 0.63
VIM-206ENST00000487938 BBOF1Q8ND07 529 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 SLC7A3Q8WY07 619 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 HAUS1Q96CS2 278 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 TEX13BQ9BXU2 312 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 IP6K2Q9UHH9 426 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 IVNS1ABPQ9Y6Y0 642 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 PARP14Q460N5 1801 aa19.01■□□□□ 0.63
VIM-206ENST00000487938 UBOX5O94941 541 aa19■□□□□ 0.63
VIM-206ENST00000487938 OAS1P00973 400 aaKnown RBP19■□□□□ 0.63
VIM-206ENST00000487938 TBXAS1P24557 533 aaPredicted RBP19■□□□□ 0.63
VIM-206ENST00000487938 ABCD1P33897 745 aa19■□□□□ 0.63
VIM-206ENST00000487938 OAZ1P54368 228 aa19■□□□□ 0.63
VIM-206ENST00000487938 TXNRD3NBQ6F5E7 133 aa19■□□□□ 0.63
VIM-206ENST00000487938 CCDC63Q8NA47 563 aa19■□□□□ 0.63
VIM-206ENST00000487938 MCEEQ96PE7 176 aa19■□□□□ 0.63
VIM-206ENST00000487938 SLITRK1Q96PX8 696 aa19■□□□□ 0.63
VIM-206ENST00000487938 SAYSD1Q9NPB0 183 aa19■□□□□ 0.63
VIM-206ENST00000487938 KCNG1Q9UIX4 513 aa19■□□□□ 0.63
VIM-206ENST00000487938 CNTN6Q9UQ52 1028 aa19■□□□□ 0.63
VIM-206ENST00000487938 DYNC1LI1Q9Y6G9 523 aaKnown RBP19■□□□□ 0.63
VIM-206ENST00000487938 LIASO43766 372 aa19■□□□□ 0.63
VIM-206ENST00000487938 PIGRP01833 764 aa19■□□□□ 0.63
VIM-206ENST00000487938 KRT1P04264 644 aa19■□□□□ 0.63
VIM-206ENST00000487938 BRD2P25440 801 aaKnown RBP19■□□□□ 0.63
VIM-206ENST00000487938 STX2P32856 288 aa19■□□□□ 0.63
VIM-206ENST00000487938 RDXP35241 583 aaKnown RBP19■□□□□ 0.63
VIM-206ENST00000487938 ZNF252P-AS1Q0IIN9 211 aa19■□□□□ 0.63
VIM-206ENST00000487938 TMED2Q15363 201 aa19■□□□□ 0.63
VIM-206ENST00000487938 STXBP2Q15833 593 aa19■□□□□ 0.63
VIM-206ENST00000487938 RCOR2Q8IZ40 523 aa19■□□□□ 0.63
VIM-206ENST00000487938 TGS1Q96RS0 853 aaKnown RBP19■□□□□ 0.63
VIM-206ENST00000487938 CCDC77Q9BR77 488 aa19■□□□□ 0.63
VIM-206ENST00000487938 RLFQ13129 1914 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 ADGRA2Q96PE1 1338 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 TMEM191CA6NGB0 347 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 HGSO14964 777 aaPredicted RBP18.99■□□□□ 0.63
VIM-206ENST00000487938 CDH16O75309 829 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 TMEM191BP0C7N4 346 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 MMP8P22894 467 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 RPS12P25398 132 aaKnown RBP18.99■□□□□ 0.63
VIM-206ENST00000487938 OGDHQ02218 1023 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 TMEM63BQ5T3F8 832 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 DCAF15Q66K64 600 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 CATSPERGQ6ZRH7 1159 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 CAPN12Q6ZSI9 719 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 CEP57Q86XR8 500 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 TCP11Q8WWU5 503 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 PAIP2Q9BPZ3 127 aaKnown RBP18.99■□□□□ 0.63
VIM-206ENST00000487938 TCHPQ9BT92 498 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 LGALS13Q9UHV8 139 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 RASA4BC9J798 803 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 RASA4O43374 803 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 ATG7O95352 703 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 GSTA1P08263 222 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 CETN2P41208 172 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 ARSEP51690 589 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 CAPSQ13938 189 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 STAT4Q14765 748 aa18.99■□□□□ 0.63
VIM-206ENST00000487938 ZCCHC9Q8N567 271 aaKnown RBP18.99■□□□□ 0.63
VIM-206ENST00000487938 NFKBIEO00221 500 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 MGRN1O60291 552 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 SPAG7O75391 227 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 SUN1O94901 812 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 ZBTB7AO95365 584 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 MYL6P60660 151 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 GPS1Q13098 491 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 FASTKD3Q14CZ7 662 aaKnown RBP18.98■□□□□ 0.63
VIM-206ENST00000487938 DCUN1D2Q6PH85 259 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 MRRFQ96E11 262 aaKnown RBP18.98■□□□□ 0.63
VIM-206ENST00000487938 IMPG2Q9BZV3 1241 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 NKIRAS1Q9NYS0 192 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 PHIPQ8WWQ0 1821 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 POC1B-GALNT4F8VUJ3 575 aa18.98■□□□□ 0.63
VIM-206ENST00000487938 STAM2O75886 525 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms