RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 PRKD2Q9BZL6 878 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 MAGEC2Q9UBF1 373 aaPredicted RBP18.4■□□□□ 0.54
VIM-205ENST00000485947 CACNG4Q9UBN1 327 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 FBXW11Q9UKB1 542 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 STYXL1Q9Y6J8 313 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 ZDBF2Q9HCK1 2354 aa18.4■□□□□ 0.54
VIM-205ENST00000485947 H7C4K7 107 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 CETN3O15182 167 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 CBFA2T2O43439 604 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 GNA14O95837 355 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 FANCCQ00597 558 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 PPP2R3AQ06190 1150 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 SOX4Q06945 474 aaPredicted RBP18.39■□□□□ 0.53
VIM-205ENST00000485947 KCNA1Q09470 495 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 MTMR3Q13615 1198 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 LIN9Q5TKA1 542 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 PRSS55Q6UWB4 352 aaPredicted RBP18.39■□□□□ 0.53
VIM-205ENST00000485947 FILIP1Q7Z7B0 1213 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 C12orf56Q8IXR9 622 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 NXPE3Q969Y0 559 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.39■□□□□ 0.53
VIM-205ENST00000485947 MAFFQ9ULX9 164 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 UBQLN1Q9UMX0 589 aaKnown RBP18.39■□□□□ 0.53
VIM-205ENST00000485947 NUB1Q9Y5A7 615 aa18.39■□□□□ 0.53
VIM-205ENST00000485947 ZFP37Q9Y6Q3 630 aaPredicted RBP18.39■□□□□ 0.53
VIM-205ENST00000485947 KCNJ18B7U540 433 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 TGFB1I1O43294 461 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 SERPINC1P01008 464 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 HARSP12081 509 aaKnown RBP18.38■□□□□ 0.53
VIM-205ENST00000485947 ATP1A3P13637 1013 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 LRPAP1P30533 357 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 KCNJ12Q14500 433 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 ZBTB6Q15916 424 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 SLC8B1Q6J4K2 584 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 SLC9A9Q8IVB4 645 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 APPL2Q8NEU8 664 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 SMG7Q92540 1137 aaKnown RBP18.38■□□□□ 0.53
VIM-205ENST00000485947 SUSD3Q96L08 255 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 TRIM5Q9C035 493 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 ASB7Q9H672 318 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 RPF1Q9H9Y2 349 aaKnown RBP18.38■□□□□ 0.53
VIM-205ENST00000485947 IGSF9Q9P2J2 1179 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 LIMA1Q9UHB6 759 aaKnown RBP18.38■□□□□ 0.53
VIM-205ENST00000485947 DERAQ9Y315 318 aa18.38■□□□□ 0.53
VIM-205ENST00000485947 TMEM221A6NGB7 291 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 M0R296 226 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 AP5Z1O43299 807 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 FAM189A1O60320 539 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 NR3C1P04150 777 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 TPM3P06753 285 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 WEE2P0C1S8 567 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 RPL17P18621 184 aaKnown RBP18.37■□□□□ 0.53
VIM-205ENST00000485947 NR2F2P24468 414 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 ADAM9Q13443 819 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 TCP11X2Q5H9J9 407 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 IRF2BP1Q8IU81 584 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 C3orf58Q8NDZ4 430 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 ZNF707Q96C28 371 aaPredicted RBP18.37■□□□□ 0.53
VIM-205ENST00000485947 MRFAP1L1Q96HT8 127 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 MSTO1Q9BUK6 570 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 HAPLN2Q9GZV7 340 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 PIDD1Q9HB75 910 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 GOLGA2P5Q9HBQ8 144 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 AGPAT3Q9NRZ7 376 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 CDH22Q9UJ99 828 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 CPSF3Q9UKF6 684 aaKnown RBP18.37■□□□□ 0.53
VIM-205ENST00000485947 CLUHO75153 1309 aa18.37■□□□□ 0.53
VIM-205ENST00000485947 LRRC10BA6NIK2 292 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 SLC16A3O15427 465 aaKnown RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 MEFVO15553 781 aaPredicted RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 XYLBO75191 536 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 RFPL2O75678 378 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 ADCY5O95622 1261 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 TPM2P07951 284 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 CXCL8P10145 99 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 OR1D2P34982 312 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 ZNF75DP51815 510 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 MARSP56192 900 aaKnown RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 MRPL58Q14197 206 aaKnown RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 FILIP1LQ4L180 1135 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 ZNF461Q8TAF7 563 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 CNOT6LQ96LI5 555 aaKnown RBP18.36■□□□□ 0.53
VIM-205ENST00000485947 PRRX2Q99811 253 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 MKNK1Q9BUB5 465 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 DMAC2Q9NW81 257 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 EPS15L1Q9UBC2 864 aa18.36■□□□□ 0.53
VIM-205ENST00000485947 CITO14578 2027 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 ARHGEF37A1IGU5 675 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 KIAA0391O15091 583 aaKnown RBP18.35■□□□□ 0.53
VIM-205ENST00000485947 TBC1D4O60343 1298 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 C8AP07357 584 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 TKTP29401 623 aaKnown RBP18.35■□□□□ 0.53
VIM-205ENST00000485947 CDC25BP30305 580 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 UBASH3AP57075 661 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 CCDC173Q0VFZ6 552 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 KRT31Q15323 416 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 ENOX2Q16206 610 aaKnown RBP18.35■□□□□ 0.53
VIM-205ENST00000485947 HSP90AA4PQ58FG1 418 aa18.35■□□□□ 0.53
VIM-205ENST00000485947 PPM1LQ5SGD2 360 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms