RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MAGEA13PA6NCF6 341 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 MAP3K13O43283 966 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 PSTPIP1O43586 416 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 ATP9AO75110 1047 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 ZC3H18Q86VM9 953 aaKnown RBP14.05□□□□□ -0.16
USP40-214ENST00000483519 RTKN2Q8IZC4 609 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 MCUR1Q96AQ8 359 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 SYNCQ9H7C4 482 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 VPS37BQ9H9H4 285 aa14.05□□□□□ -0.16
USP40-214ENST00000483519 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.05□□□□□ -0.162e-7■■■■■ 93.2
USP40-214ENST00000483519 ZNFX1Q9P2E3 1918 aaKnown RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 FAM196BA6NMK8 535 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 CAPN9O14815 690 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 GYG2O15488 501 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 GTF2IP78347 998 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 DSTYKQ6XUX3 929 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 RHOT1Q8IXI2 618 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 DAW1Q8N136 415 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 DDX1Q92499 740 aaKnown RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 NT5C1BQ96P26 610 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 OSBPL8Q9BZF1 889 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 RBBP6Q7Z6E9 1792 aaKnown RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 ZNF536O15090 1300 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 TISP43B9A030 160 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 DNALI1O14645 258 aaPredicted RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 ATP2A1O14983 1001 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 SLC5A9Q2M3M2 681 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 PLEKHO2Q8TD55 490 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 BICD1Q96G01 975 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 LXNQ9BS40 222 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 TIPINQ9BVW5 301 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 PPP1R12CQ9BZL4 782 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 FAM192AQ9GZU8 254 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 MMADHCQ9H3L0 296 aaPredicted RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 WRAP73Q9P2S5 460 aaPredicted RBP14.04□□□□□ -0.16
USP40-214ENST00000483519 SLX4Q8IY92 1834 aa14.04□□□□□ -0.16
USP40-214ENST00000483519 NDC80O14777 642 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 GSC2O15499 205 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 MAP3K7O43318 606 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 ZBED4O75132 1171 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 PSMG1O95456 288 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 BMP3P12645 472 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 ADSSP30520 456 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 CETN2P41208 172 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 SNRPFP62306 86 aaKnown RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 AP1B1Q10567 949 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 KRT39Q6A163 491 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 SLC30A10Q6XR72 485 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 MCOLN2Q8IZK6 566 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 VPS52Q8N1B4 723 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 HELQQ8TDG4 1101 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 PDP2Q9P2J9 529 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 STX18Q9P2W9 335 aaKnown RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 ZNF212Q9UDV6 495 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 KRT36O76013 467 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 PROSCO94903 275 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 TJP3O95049 919 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 FDX1P10109 184 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 CACNA2D1P54289 1103 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 POLE2P56282 527 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 DYNC1I2Q13409 638 aaKnown RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 KPNB1Q14974 876 aaKnown RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 GSTA3Q16772 222 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 ACSBG2Q5FVE4 666 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 SESTD1Q86VW0 696 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 KATNAL2Q8IYT4 538 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 ARHGAP24Q8N264 748 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 PTCD3Q96EY7 689 aaKnown RBP14.03□□□□□ -0.16
USP40-214ENST00000483519 NSL1Q96IY1 281 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 FAM118BQ9BPY3 351 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 MRIQ9BWK5 157 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 TRIM55Q9BYV6 548 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 DCTN4Q9UJW0 460 aa14.03□□□□□ -0.16
USP40-214ENST00000483519 KRT4P19013 534 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 GPC3P51654 580 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 CUL3Q13618 768 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 CCDC62Q6P9F0 684 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 PADI6Q6TGC4 694 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 CENPUQ71F23 418 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 NRG4Q8WWG1 115 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 SEMA4DQ92854 862 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 GMCL1Q96IK5 515 aa14.02□□□□□ -0.16
USP40-214ENST00000483519 CFAP69A5D8W1 941 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 MORF4L2Q15014 288 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 CERKLQ49MI3 558 aaPredicted RBP14.02□□□□□ -0.17
USP40-214ENST00000483519 GMCL1P1Q8NEA9 526 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 EXD1Q8NHP7 514 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 GBP5Q96PP8 586 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 IWS1Q96ST2 819 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 UNC45AQ9H3U1 944 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 GPBP1L1Q9HC44 474 aaPredicted RBP14.02□□□□□ -0.17
USP40-214ENST00000483519 TMEM8AQ9HCN3 771 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
USP40-214ENST00000483519 COQ4Q9Y3A0 265 aa14.02□□□□□ -0.17
USP40-214ENST00000483519 A8MXQ7 604 aa14.01□□□□□ -0.17
USP40-214ENST00000483519 TM9SF1O15321 606 aa14.01□□□□□ -0.17
USP40-214ENST00000483519 DNAJC6O75061 913 aa14.01□□□□□ -0.17
USP40-214ENST00000483519 FGFR1P11362 822 aa14.01□□□□□ -0.17
USP40-214ENST00000483519 UNGP13051 313 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms