RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 TUBD1Q9UJT1 453 aa4.58□□□□□ -1.68
PRPF40A-207ENST00000471701 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.58□□□□□ -1.68
PRPF40A-207ENST00000471701 GCOM1H8Y6P7 765 aaPredicted RBP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 POLRMTO00411 1230 aaKnown RBP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 TTLL1O95922 423 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 MT-CO1P00395 513 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 MYBL2P10244 700 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 PPP3CBP16298 524 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 NPTX2P47972 431 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 SRSF7Q16629 238 aaKnown RBP eCLIP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 INAVAQ3KP66 663 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 PAPD7Q5XG87 772 aaKnown RBP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 GLCCI1Q86VQ1 547 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 TMIEQ8NEW7 156 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 MYCBPAPQ8TBZ2 947 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 HASPINQ8TF76 798 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 FAM126AQ9BYI3 521 aaPredicted RBP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 BRD9Q9H8M2 597 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 SPC25Q9HBM1 224 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 VSX1Q9NZR4 365 aaPredicted RBP4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 SLC45A2Q9UMX9 530 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 LIMCH1Q9UPQ0 1083 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 IPPQ9Y573 584 aa4.57□□□□□ -1.68
PRPF40A-207ENST00000471701 SPATA31A3Q5VYP0 1347 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 A0A0B4J269 797 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 ERBB2P04626 1255 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 PRKCGP05129 697 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 GNAI3P08754 354 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 POU3F3P20264 500 aaPredicted RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 CYP2C19P33261 490 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 IARSP41252 1262 aaKnown RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 GNAI1P63096 354 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 TLE1Q04724 770 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 ITKQ08881 620 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 TUBB3Q13509 450 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 TXNRD1Q16881 649 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 FLYWCH1Q4VC44 716 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 KHDC1Q4VXA5 237 aaKnown RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 PLAC9Q5JTB6 97 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 SYDE2Q5VT97 1194 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 FCRLBQ6BAA4 426 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 TAPT1Q6NXT6 567 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 PNMA8AQ86V59 439 aaPredicted RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 PDSS2Q86YH6 399 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 RASAL3Q86YV0 1011 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 FAM9AQ8IZU1 332 aaPredicted RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 ANKS1AQ92625 1134 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 SCAMP4Q969E2 229 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 COA7Q96BR5 231 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 LRIG1Q96JA1 1093 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 VRK1Q99986 396 aaPredicted RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 TPSD1Q9BZJ3 242 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 SIDT1Q9NXL6 827 aaKnown RBP4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 ATP8A1Q9Y2Q0 1164 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHB1Q9Y5F3 818 aa4.56□□□□□ -1.68
PRPF40A-207ENST00000471701 SHTN1A0MZ66 631 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 MANSC4A6NHS7 340 aaPredicted RBP4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 LINC00473A8K010 186 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 ELFN1P0C7U0 828 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 NR2F6P10588 404 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 CCND1P24385 295 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 ZNF81P51508 661 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 HNRNPMP52272 730 aaKnown RBP eCLIP4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 KRTAP10-11P60412 298 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 GRM1Q13255 1194 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 C3orf36Q3SXR2 165 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 CCDC93Q567U6 631 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 EFCAB2Q5VUJ9 269 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 EGFLAMQ63HQ2 1017 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 AMIGO2Q86SJ2 522 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 CBARPQ8N350 705 aaPredicted RBP4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 POC1BQ8TC44 478 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 KAT5Q92993 513 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 ALG8Q9BVK2 526 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 SIK2Q9H0K1 926 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 CFAP97Q9P2B7 532 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 PADI4Q9UM07 663 aa4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 CFAP20Q9Y6A4 193 aaKnown RBP4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 COL3A1P02461 1466 aaPredicted RBP4.55□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHGA12O60330 932 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 SOAT2O75908 522 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 URI1O94763 535 aaPredicted RBP4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 MALP21145 153 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 EDNRBP24530 442 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 GUCY2FP51841 1108 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PSMC1P62191 440 aaKnown RBP4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 MC2RQ01718 297 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 SNAPC2Q13487 334 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 UAP1L1Q3KQV9 507 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 SUMO4Q6EEV6 95 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 DDB2Q92466 427 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PBKQ96KB5 322 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 DMRTA2Q96SC8 542 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 AMBRA1Q9C0C7 1298 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 EHD3Q9NZN3 535 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 POLHQ9Y253 713 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHGA9Q9Y5G4 932 aaKnown RBP4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHGA8Q9Y5G5 932 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHGA7Q9Y5G6 932 aa4.54□□□□□ -1.68
PRPF40A-207ENST00000471701 PCDHGA6Q9Y5G7 932 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms