RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 MYLK2Q9H1R3 596 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 MRPL47Q9HD33 250 aaKnown RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 FBXO40Q9UH90 709 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 FNDC3AQ9Y2H6 1198 aaKnown RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 CICQ96RK0 1608 aaPredicted RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 TAF1P21675 1872 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 DDX3YO15523 660 aaKnown RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 DNAJC8O75937 253 aaPredicted RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 ABCG1P45844 678 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 GRM1Q13255 1194 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 RCN1Q15293 331 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 THEMIS2Q5TEJ8 643 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 LRRC6Q86X45 466 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 SP8Q8IXZ3 490 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 ATG4CQ96DT6 458 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 KREMEN1Q96MU8 473 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 SIX2Q9NPC8 291 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 RAB6BQ9NRW1 208 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 NYAP2Q9P242 653 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 IVNS1ABPQ9Y6Y0 642 aa11.28□□□□□ -0.6
CHD3-208ENST00000470531 PHRF1Q9P1Y6 1649 aaKnown RBP11.28□□□□□ -0.6
CHD3-208ENST00000470531 TJP3O95049 919 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 PHBP35232 272 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 CDH6P55285 790 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 TMEM62Q0P6H9 643 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 RRP1BQ14684 758 aaKnown RBP11.27□□□□□ -0.6
CHD3-208ENST00000470531 GPAT2Q6NUI2 795 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 ARID3BQ8IVW6 561 aaPredicted RBP11.27□□□□□ -0.6
CHD3-208ENST00000470531 MAIP1Q8WWC4 291 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 AKT1S1Q96B36 256 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 ACAP3Q96P50 834 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 TSC22D3Q99576 134 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 MXRA8Q9BRK3 442 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 TRIM55Q9BYV6 548 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 FBXO6Q9NRD1 293 aaPredicted RBP11.27□□□□□ -0.6
CHD3-208ENST00000470531 TBX20Q9UMR3 447 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 TIAM2Q8IVF5 1701 aa11.27□□□□□ -0.6
CHD3-208ENST00000470531 TCN1P20061 433 aaPredicted RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 TAS2R40P59535 323 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 HADHQ16836 314 aaKnown RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 GEN1Q17RS7 908 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 FAM102AQ5T9C2 384 aaPredicted RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 C1orf146Q5VVC0 180 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 RINLQ6ZS11 566 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 SAMD7Q7Z3H4 446 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 NIM1KQ8IY84 436 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 POU5F2Q8N7G0 328 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 RNF169Q8NCN4 708 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 ATP6V0A1Q93050 837 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 ZNF317Q96PQ6 595 aaPredicted RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 TUFT1Q9NNX1 390 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 C5orf60A6NFR6 353 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 COPEO14579 308 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 MCF2LO15068 1137 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 AVILO75366 819 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 F7P08709 466 aaPredicted RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 BTKQ06187 659 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 NFX1Q12986 1120 aaKnown RBP11.27□□□□□ -0.61
CHD3-208ENST00000470531 LAMB3Q13751 1172 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 EMC10Q5UCC4 262 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 GPD1LQ8N335 351 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 GLIS1Q8NBF1 620 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 SLC26A7Q8TE54 656 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 MTMR12Q9C0I1 747 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 KIAA1683Q9H0B3 1180 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 PCMTD2Q9NV79 361 aa11.27□□□□□ -0.61
CHD3-208ENST00000470531 NEMP1O14524 444 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 DGKIO75912 1065 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 TCF4P15884 667 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 ITIH2P19823 946 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 PSMC5P62195 406 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 THOC5Q13769 683 aaKnown RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 NCOA4Q13772 614 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 LACTB2Q53H82 288 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 ACAD10Q6JQN1 1059 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RGS9BPQ6ZS82 235 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 TRIM50Q86XT4 487 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RNF149Q8NC42 400 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 B4GALNT2Q8NHY0 566 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 ATXN2LQ8WWM7 1075 aaKnown RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 VPS11Q9H270 941 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RPAP3Q9H6T3 665 aaPredicted RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 FAM49BQ9NUQ9 324 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 GGA2Q9UJY4 613 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 MEI4A8MW99 385 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 B2RBV5 119 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 DESP17661 470 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 NCALDP61601 193 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 FMO1Q01740 532 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 ANKRD20A2Q5SQ80 823 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 ANKRD20A1Q5TYW2 823 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 NLRP9Q7RTR0 991 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RAB3IL1Q8TBN0 382 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 MASTLQ96GX5 879 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 GTF3C4Q9UKN8 822 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RPTORQ8N122 1335 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 PARP4Q9UKK3 1724 aaKnown RBP11.26□□□□□ -0.61
CHD3-208ENST00000470531 CAPN9O14815 690 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 GJB1P08034 283 aa11.26□□□□□ -0.61
CHD3-208ENST00000470531 RBP3P10745 1247 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms