RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 POLD4Q9HCU8 107 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 STOML1Q9UBI4 398 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 MORF4L1Q9UBU8 362 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 COL1A2P08123 1366 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 WDR90Q96KV7 1748 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 MAP3K7O43318 606 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 PLEKP08567 350 aaPredicted RBP8.11□□□□□ -1.11
USP54-210ENST00000466048 ARPP19P56211 112 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 CNTN2Q02246 1040 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 CUL3Q13618 768 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 DUSP28Q4G0W2 176 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 ZPBP2Q6X784 338 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 PPM1KQ8N3J5 372 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 PDCD7Q8N8D1 485 aaKnown RBP8.11□□□□□ -1.11
USP54-210ENST00000466048 BBOF1Q8ND07 529 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 DRC3Q9H069 523 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 LRRC4Q9HBW1 653 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 TXNDC16Q9P2K2 825 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 ARHGAP28Q9P2N2 729 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 AGO2Q9UKV8 859 aaKnown RBP8.11□□□□□ -1.11
USP54-210ENST00000466048 A0A0G2JMZ2 1700 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 IGKV6D-21A0A0A0MT36 114 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 DAPK3O43293 454 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 MGEA5O60502 916 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 PIGRP01833 764 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 TMEM253P0C7T8 217 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 NFKBIAP25963 317 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 AMPD2Q01433 879 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 PTPN11Q06124 597 aaPredicted RBP8.11□□□□□ -1.11
USP54-210ENST00000466048 CYP24A1Q07973 514 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 CELF3Q5SZQ8 465 aaKnown RBP8.11□□□□□ -1.11
USP54-210ENST00000466048 APPL2Q8NEU8 664 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 CD99L2Q8TCZ2 262 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 STAMBPL1Q96FJ0 436 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 CBWD1Q9BRT8 395 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 LACRTQ9GZZ8 138 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 GPRC5CQ9NQ84 441 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 TMEM51Q9NW97 253 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 SCN4AP35499 1836 aa8.11□□□□□ -1.11
USP54-210ENST00000466048 COL11A1P12107 1806 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 SOWAHBA6NEL2 793 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 SEPT4O43236 478 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ZNF189O75820 626 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 ATP1A1P05023 1023 aaKnown RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 ZFXP17010 805 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 GCLMP48507 274 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ARHGAP44Q17R89 818 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 IRF2BP2Q7Z5L9 587 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 KSR1Q8IVT5 923 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 BBS5Q8N3I7 341 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 AFAP1L2Q8N4X5 818 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 DHX33Q9H6R0 707 aaKnown RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 SIX2Q9NPC8 291 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 PDLIM7Q9NR12 457 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 KLC4Q9NSK0 619 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 NAGPAQ9UK23 515 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 H7C4K7 107 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 MAFO75444 373 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 RGS20O76081 388 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ARL2P36404 184 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 MCCD1P59942 119 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 OSTNP61366 133 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 RBP5P82980 135 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 IL9RQ01113 521 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 NNTQ13423 1086 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 EPC2Q52LR7 807 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 FAM117BQ6P1L5 589 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 PEX26Q7Z412 305 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 KLHL7Q8IXQ5 586 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 PARP9Q8IXQ6 854 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 DCP1BQ8IZD4 617 aaKnown RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 TEX9Q8N6V9 391 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 GSDMBQ8TAX9 411 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 HNRNPLLQ8WVV9 542 aaKnown RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 BRI3BPQ8WY22 251 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 GDAP1L1Q96MZ0 367 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 TSPAN18Q96SJ8 248 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 AGPAT1Q99943 283 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 PRDM4Q9UKN5 801 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 SLC8A2Q9UPR5 921 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 TRPV2Q9Y5S1 764 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 SMCHD1A6NHR9 2005 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ZNF862O60290 1169 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 LGR5O75473 907 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 CORO7P57737 925 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 IFRD2Q12894 506 aaPredicted RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 PSMD6Q15008 389 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 MAPRE1Q15691 268 aaKnown RBP8.1□□□□□ -1.11
USP54-210ENST00000466048 OLFML2BQ68BL8 750 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 SAPCD2Q86UD0 394 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ZNF677Q86XU0 584 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 CFAP61Q8NHU2 1237 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 TMEM169Q96HH4 297 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 RMDN2Q96LZ7 410 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 FBXL18Q96ME1 805 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ABCB6Q9NP58 842 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 FGFR1OP2Q9NVK5 253 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 MSRAQ9UJ68 235 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 AMFRQ9UKV5 643 aa8.1□□□□□ -1.11
USP54-210ENST00000466048 ZNF571Q7Z3V5 609 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms