RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RALAP11233 206 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 NEK2P51955 445 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 EZH2Q15910 746 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 CATSPER3Q86XQ3 398 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 LZTS1Q9Y250 596 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 KDM6AO15550 1401 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ADGRB1O14514 1584 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ANGPT2O15123 496 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 PJA2O43164 708 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ADCY3O60266 1144 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 HSPA1AP0DMV8 641 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 HSPA1BP0DMV9 641 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ZC2HC1CQ53FD0 456 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 THEM5Q8N1Q8 247 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 PGBD4Q96DM1 585 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 ZBED2Q9BTP6 218 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 KIF9Q9HAQ2 790 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 AURKCQ9UQB9 309 aa19.9■□□□□ 0.78
CCDC88B-204ENST00000463837 PTENP60484 403 aa19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 RNF135Q8IUD6 432 aa19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 DDI1Q8WTU0 396 aa19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 ATXN2LQ8WWM7 1075 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 GJD4Q96KN9 370 aaPredicted RBP19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 JPH1Q9HDC5 661 aaPredicted RBP19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 AGPAT3Q9NRZ7 376 aa19.89■□□□□ 0.78
CCDC88B-204ENST00000463837 FAM237AA0A1B0GTK4 181 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 YTHDF3Q7Z739 585 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 ACAD9Q9H845 621 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 BLOC1S6Q9UL45 172 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 PAIP2BQ9ULR5 123 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 SERPINB3P29508 390 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 NDUFAF2Q8N183 169 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 PPP1R2P1Q96PQ5 205 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 LMCD1Q9NZU5 365 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 COPAP53621 1224 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 CAPRIN1Q14444 709 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 RCN1Q15293 331 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 MEA1Q16626 185 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 C11orf63Q6NUN7 778 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 PCYOX1LQ8NBM8 494 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 TSPAN17Q96FV3 270 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 RNF181Q9P0P0 153 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 CDYLQ9Y232 598 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 PDGFRAP16234 1089 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 PPHLN1Q8NEY8 458 aaKnown RBP19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 ZNF560Q96MR9 790 aa19.89■□□□□ 0.77
CCDC88B-204ENST00000463837 ATMINO43313 823 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 STIP1P31948 543 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 SEC23AQ15436 765 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 ZNF446Q9NWS9 450 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 GGA2Q9UJY4 613 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 NEMP1O14524 444 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 HLA-DRAP01903 254 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 MYL2P10916 166 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 CALB2P22676 271 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 SESN2P58004 480 aaPredicted RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 PRAMEP78395 509 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 WASHC2DQ5SRD0 308 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 OLFML2BQ68BL8 750 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 SLC24A2Q9UI40 661 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 EXTL3O43909 919 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 MAP4P27816 1152 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 DAB2P98082 770 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 NAF1Q96HR8 494 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 ANKEF1Q9NU02 776 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 SRP72O76094 671 aaKnown RBP19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 APOA1P02647 267 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 CPA2P48052 419 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 PPP4CP60510 307 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 TTLL4Q14679 1199 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 IMPG1Q17R60 797 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 OR9Q1Q8NGQ5 310 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 C17orf75Q9HAS0 396 aa19.88■□□□□ 0.77
CCDC88B-204ENST00000463837 NDUFB10O96000 172 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 APBB2Q92870 758 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 CLMNQ96JQ2 1002 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 CDC42EP4Q9H3Q1 356 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 ZBTB7AO95365 584 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 GTF2H1P32780 548 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 CHI3L2Q15782 390 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 ITSN1Q15811 1721 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 GJB7Q6PEY0 223 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 SPATA18Q8TC71 538 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 SETD1BQ9UPS6 1966 aaKnown RBP19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 A8MXQ7 604 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 PRKCBP05771 671 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 ENO3P13929 434 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 PTPN4P29074 926 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 KCNMA1Q12791 1236 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 MTM1Q13496 603 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 KCNV1Q6PIU1 500 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 KIF17Q9P2E2 1029 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 CHORDC1Q9UHD1 332 aaPredicted RBP19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 LRRC10BA6NIK2 292 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 H0Y626 953 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 CST8O60676 142 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 TRIM16O95361 564 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 FBXO25Q8TCJ0 367 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 TNIP3Q96KP6 325 aa19.87■□□□□ 0.77
CCDC88B-204ENST00000463837 PACSIN1Q9BY11 444 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms