RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 SPATA18Q8TC71 538 aa21.28■■□□□ 1
COL9A3-204ENST00000463487 CASP10Q92851 521 aa21.28■■□□□ 1
COL9A3-204ENST00000463487 MMRN2Q9H8L6 949 aa21.28■■□□□ 1
COL9A3-204ENST00000463487 SNX9Q9Y5X1 595 aa21.28■■□□□ 1
COL9A3-204ENST00000463487 OAZ2O95190 189 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 GLUD1P00367 558 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 GCLMP48507 274 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 MARSP56192 900 aaKnown RBP21.27■■□□□ 1
COL9A3-204ENST00000463487 MCCD1P59942 119 aaPredicted RBP21.27■■□□□ 1
COL9A3-204ENST00000463487 TYRO3Q06418 890 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 CETN1Q12798 172 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 SGSM1Q2NKQ1 1148 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 TOP6BLQ8N6T0 577 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 FAM84AQ96KN4 292 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 THAP9Q9H5L6 903 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 DZANK1Q9NVP4 752 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 SCN1AP35498 2009 aa21.27■■□□□ 1
COL9A3-204ENST00000463487 VWA8A3KMH1 1905 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 OR6C75A6NL08 312 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 CST3P01034 146 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-204ENST00000463487 MYL6P60660 151 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 PPP3CAQ08209 521 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 ADAM15Q13444 863 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 MRPL58Q14197 206 aaKnown RBP21.26■□□□□ 0.99
COL9A3-204ENST00000463487 COL19A1Q14993 1142 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 AAK1Q2M2I8 961 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 LLGL2Q6P1M3 1020 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 GLYCTKQ8IVS8 523 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 MMS19Q96T76 1030 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 UBE2ZQ9H832 354 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-204ENST00000463487 VRTNQ9H8Y1 702 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.26■□□□□ 0.99
COL9A3-204ENST00000463487 TIMM13Q9Y5L4 95 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-204ENST00000463487 HCFC2Q9Y5Z7 792 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 CDY1Q9Y6F8 540 aa21.26■□□□□ 0.99
COL9A3-204ENST00000463487 RPL17P18621 184 aaKnown RBP21.25■□□□□ 0.99
COL9A3-204ENST00000463487 OR1D2P34982 312 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 CLCN4P51793 760 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 CTC1Q2NKJ3 1217 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 WDR72Q3MJ13 1102 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 ZNF667Q5HYK9 610 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 C1orf220Q5T0J3 134 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 SLC8B1Q6J4K2 584 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 TMEM184AQ6ZMB5 413 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 C15orf39Q6ZRI6 1047 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 CREBRFQ8IUR6 639 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 FBXL13Q8NEE6 735 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 ENOX1Q8TC92 643 aaKnown RBP21.25■□□□□ 0.99
COL9A3-204ENST00000463487 SLC35C1Q96A29 364 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 CNOT6LQ96LI5 555 aaKnown RBP21.25■□□□□ 0.99
COL9A3-204ENST00000463487 CLSTN3Q9BQT9 956 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 THEGQ9P2T0 379 aa21.25■□□□□ 0.99
COL9A3-204ENST00000463487 HLA-DRAP01903 254 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 CPB1P15086 417 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 HOXB8P17481 243 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-204ENST00000463487 GTF2F1P35269 517 aaKnown RBP eCLIP21.24■□□□□ 0.991e-7■■■■□ 26.1
COL9A3-204ENST00000463487 LHX1P48742 406 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 MYL7Q01449 175 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 RAB33AQ14088 237 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 NFKBIBQ15653 356 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 WDR44Q5JSH3 913 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 WSCD1Q658N2 575 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 PALB2Q86YC2 1186 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 ADGRF2Q8IZF7 708 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 HDAC7Q8WUI4 952 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 PLEKHA4Q9H4M7 779 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 NXF1Q9UBU9 619 aaKnown RBP21.24■□□□□ 0.99
COL9A3-204ENST00000463487 FBXL5Q9UKA1 691 aa21.24■□□□□ 0.99
COL9A3-204ENST00000463487 VNN1O95497 513 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 FAM163BP0C2L3 166 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 MTIF2P46199 727 aaKnown RBP21.23■□□□□ 0.99
COL9A3-204ENST00000463487 ARPP19P56211 112 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 LIN9Q5TKA1 542 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 TPGS2Q68CL5 300 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 TRIM59Q8IWR1 403 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 PDCL2Q8N4E4 241 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 SLC22A17Q8WUG5 538 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 DNAI2Q9GZS0 605 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 XYLT2Q9H1B5 865 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 DNAJC25Q9H1X3 360 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 NFE2L3Q9Y4A8 694 aa21.23■□□□□ 0.99
COL9A3-204ENST00000463487 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-204ENST00000463487 P4HA2O15460 535 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 LINC01565O15544 149 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 TGM5O43548 720 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 PRKCSHP14314 528 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-204ENST00000463487 TRIM21P19474 475 aaKnown RBP21.22■□□□□ 0.99
COL9A3-204ENST00000463487 KCNA5P22460 613 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 PCSK1P29120 753 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 ELF1P32519 619 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 TSPY1Q01534 308 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 MYL5Q02045 173 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 TAS1R2Q8TE23 839 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 MED15Q96RN5 788 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 SNX25Q9H3E2 840 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 SFXN1Q9H9B4 322 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 RAB20Q9NX57 234 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 MAFFQ9ULX9 164 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 L1RE1Q9UN81 338 aa21.22■□□□□ 0.99
COL9A3-204ENST00000463487 FAM50BQ9Y247 325 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms