RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	CCR3	P51677	355 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	ARHGAP8	P85298	464 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CACNB1	Q02641	598 aa	Predicted RBP	12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	DUSP4	Q13115	394 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	LAIR1	Q6GTX8	287 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	DTHD1	Q6ZMT9	781 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815		Q6ZS52	159 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	ELMOD1	Q8N336	334 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	OR10T2	Q8NGX3	314 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CHFR	Q96EP1	664 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	MSANTD3	Q96H12	275 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	ZSCAN31	Q96LW9	406 aa	Predicted RBP	12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CNTNAP3B	Q96NU0	1288 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	OXCT2	Q9BYC2	517 aa	Predicted RBP	12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CNTNAP3	Q9BZ76	1288 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	RBM12	Q9NTZ6	932 aa	Known RBP	12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	KCND2	Q9NZV8	630 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	MYH11	P35749	1972 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	WDFY3	Q8IZQ1	3526 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	USP24	Q9UPU5	2620 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	ACACB	O00763	2458 aa		12.15	□□□□□ -0.46
PTPN7-204	ENST00000462815	CHD8	Q9HCK8	2581 aa		12.15	□□□□□ -0.47
PTPN7-204	ENST00000462815	ANK1	P16157	1881 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	ZZEF1	O43149	2961 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	OR6C75	A6NL08	312 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	ZNF263	O14978	683 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	CLDN3	O15551	220 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	SOAT2	O75908	522 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	PRAMEF12	O95522	483 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	PLA2G4B	P0C869	781 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	TYMP	P19971	482 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	WEE1	P30291	646 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	ZNF131	P52739	623 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	NRL	P54845	237 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	STRN3	Q13033	797 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	CCIN	Q13939	588 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	MYBPC2	Q14324	1141 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	SPATA1	Q5VX52	437 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	SPEM1	Q8N4L4	309 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	KCTD17	Q8N5Z5	321 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	CELF5	Q8N6W0	485 aa	Known RBP	12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	FAM184A	Q8NB25	1140 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	ATAD1	Q8NBU5	361 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	PSMG2	Q969U7	264 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	E2F7	Q96AV8	911 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	KIF12	Q96FN5	646 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	RTKN	Q9BST9	563 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	GPR88	Q9GZN0	384 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	IL21	Q9HBE4	155 aa		12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	CPSF3	Q9UKF6	684 aa	Known RBP	12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	UBQLN1	Q9UMX0	589 aa	Known RBP	12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	12.14	□□□□□ -0.47
PTPN7-204	ENST00000462815		A0A0B4J269	797 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	ANO9	A1A5B4	782 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SLC38A8	A6NNN8	435 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SPECC1L-ADORA2A	F8WAN1	911 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	PIR	O00625	290 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	LRP3	O75074	770 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	KRT37	O76014	449 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	CYP11A1	P05108	521 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	ATF6	P18850	670 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SDHB	P21912	280 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	CTH	P32929	405 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	CXCL12	P48061	93 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	LILRA4	P59901	499 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SPEM2	Q0P670	501 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SRSF5	Q13243	272 aa	Known RBP	12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	GNL2	Q13823	731 aa	Known RBP	12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	LPAL2	Q16609	132 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	HAUS6	Q7Z4H7	955 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	ARID3B	Q8IVW6	561 aa	Predicted RBP	12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	ZFYVE19	Q96K21	471 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	PLIN2	Q99541	437 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	REEP2	Q9BRK0	252 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	BLOC1S4	Q9NUP1	217 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	OBP2A	Q9NY56	170 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	HSFX1	Q9UBD0	423 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	TBX20	Q9UMR3	447 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	USP18	Q9UMW8	372 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SLC27A5	Q9Y2P5	690 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	SPEG	Q15772	3267 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	RALGAPA1	Q6GYQ0	2036 aa		12.13	□□□□□ -0.47
PTPN7-204	ENST00000462815	DCDC2B	A2VCK2	349 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	CHURC1-FNTB	B4DL54	471 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	OGT	O15294	1046 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	RET	P07949	1114 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	ADRB1	P08588	477 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	NFIC	P08651	508 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	MARCKS	P29966	332 aa	Predicted RBP	12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	HOXA6	P31267	233 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	FNTB	P49356	437 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	SMTN	P53814	917 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	PPP2R3A	Q06190	1150 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	PLD1	Q13393	1074 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	RILPL1	Q5EBL4	403 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	C9orf57	Q5W0N0	161 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	OVOS1	Q6IE37	1185 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	JADE1	Q6IE81	842 aa		12.12	□□□□□ -0.47
PTPN7-204	ENST00000462815	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	12.12	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms