RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CACNB3P54284 484 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ARL4CP56559 192 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 TREML1Q86YW5 311 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 FAM71AQ8IYT1 594 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 RIBC1Q8N443 379 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 HIPK4Q8NE63 616 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 USP6NLQ92738 828 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 BICD1Q96G01 975 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 THTPAQ9BU02 230 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ASCC2Q9H1I8 757 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 TMEM165Q9HC07 324 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ARHGEF4Q9NR80 690 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 CYP3A7-CYP3A51PA0A087WV96 503 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 FCHO1O14526 889 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 CREB3O43889 395 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ADRB2P07550 413 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 MYL2P10916 166 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 CYP3A7P24462 503 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 NOVP48745 357 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 MXI1P50539 228 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 USP46P62068 366 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 ZYXQ15942 572 aaKnown RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 SYDE2Q5VT97 1194 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 RIPOR1Q6ZS17 1223 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 GRK7Q8WTQ7 553 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 POMGNT1Q8WZA1 660 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 OPTNQ96CV9 577 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 FNBP1Q96RU3 617 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 DMAP1Q9NPF5 467 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 GALNT8Q9NY28 637 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 CLIC5Q9NZA1 410 aa12.36□□□□□ -0.43
CPSF3-202ENST00000460593 SAE1Q9UBE0 346 aaPredicted RBP12.36□□□□□ -0.43
CPSF3-202ENST00000460593 KAT6AQ92794 2004 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 EIF3DO15371 548 aaKnown RBP eCLIP12.35□□□□□ -0.43
CPSF3-202ENST00000460593 MTA2O94776 668 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ANPEPP15144 967 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 GAP43P17677 238 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ALCAMQ13740 583 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 CBWD2Q8IUF1 395 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ZNF276Q8N554 614 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ZCCHC9Q8N567 271 aaKnown RBP12.35□□□□□ -0.43
CPSF3-202ENST00000460593 EFCAB3Q8N7B9 438 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 AZIN2Q96A70 460 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 PANX3Q96QZ0 392 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 WDR18Q9BV38 432 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 TSSK1BQ9BXA7 367 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 TRIM55Q9BYV6 548 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 OSBPL8Q9BZF1 889 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 MANSC1Q9H8J5 431 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SAR1AQ9NR31 198 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ZBTB21Q9ULJ3 1066 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SMCHD1A6NHR9 2005 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 CCDC195A0A1B0GUA6 201 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 F5H6K3 240 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 PIK3CDO00329 1044 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 KLRC2P26717 231 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SCNN1DP51172 638 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 NRLP54845 237 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 GPX6P59796 221 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 CDC16Q13042 620 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 MSS51Q4VC12 460 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 LIN52Q52LA3 116 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 LPCAT4Q643R3 524 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SATL1Q86VE3 508 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 ZFPM1Q8IX07 1006 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 DAW1Q8N136 415 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 CCDC89Q8N998 374 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 MBOAT7Q96N66 472 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 FAM111AQ96PZ2 611 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SETDB2Q96T68 719 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 MECRQ9BV79 373 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 CD209Q9NNX6 404 aa12.35□□□□□ -0.43
CPSF3-202ENST00000460593 SMG5Q9UPR3 1016 aaKnown RBP12.35□□□□□ -0.43
CPSF3-202ENST00000460593 IGKV6D-41A0A0C4DH26 115 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 UFL1O94874 794 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PGM3O95394 542 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 HARSP12081 509 aaKnown RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 SHMT1P34896 483 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 DYNC1I2Q13409 638 aaKnown RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 MYBPC3Q14896 1274 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 LMBRD2Q68DH5 695 aaPredicted RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 CCDC62Q6P9F0 684 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 AMIGO3Q86WK7 504 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 RBM15BQ8NDT2 890 aaKnown RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PYDC1Q8WXC3 89 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 CRYGNQ8WXF5 182 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PHF12Q96QT6 1004 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 HSD17B14Q9BPX1 270 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 ECSITQ9BQ95 431 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 PDP2Q9P2J9 529 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 DAGLAQ9Y4D2 1042 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 MYH11P35749 1972 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 GRIN3BO60391 1043 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 GZMAP12544 262 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 GPSM2P81274 684 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 KLF1Q13351 362 aaPredicted RBP12.34□□□□□ -0.43
CPSF3-202ENST00000460593 OLFML2BQ68BL8 750 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 RGS9BPQ6ZS82 235 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 C11orf70Q9BRQ4 267 aa12.34□□□□□ -0.43
CPSF3-202ENST00000460593 TMEM121Q9BTD3 319 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms