RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TOM1L1O75674 476 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 FARP2O94887 1054 aaPredicted RBP12.68□□□□□ -0.38
SMPD4-213ENST00000454468 KRT3P12035 628 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 GCNT1Q02742 428 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 TFDP1Q14186 410 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 GPR162Q16538 588 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 NFIL3Q16649 462 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 FAM102AQ5T9C2 384 aaPredicted RBP12.68□□□□□ -0.38
SMPD4-213ENST00000454468 CHADLQ6NUI6 762 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 MFSD7Q6UXD7 560 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 CTAGE3PQ8IX95 158 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 ZBED8Q8IZ13 594 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 RNF169Q8NCN4 708 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 KLF6Q99612 283 aaPredicted RBP12.68□□□□□ -0.38
SMPD4-213ENST00000454468 SH3GL2Q99962 352 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 STRA6Q9BX79 667 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 TJP2Q9UDY2 1190 aa12.68□□□□□ -0.38
SMPD4-213ENST00000454468 COL4A5P29400 1685 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 EXOC1LA0A1B0GW35 172 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 H7C0C1 242 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 VNN1O95497 513 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 TBXAS1P24557 533 aaPredicted RBP12.67□□□□□ -0.38
SMPD4-213ENST00000454468 ATP5OP48047 213 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 CLUL1Q15846 466 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 KIZQ2M2Z5 673 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 TADA2BQ86TJ2 420 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 ATL2Q8NHH9 583 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 SENP7Q9BQF6 1050 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 HAPLN2Q9GZV7 340 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 TXNRD2Q9NNW7 524 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 ALG13Q9NP73 1137 aaKnown RBP12.67□□□□□ -0.38
SMPD4-213ENST00000454468 SCINQ9Y6U3 715 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 ATP2A1O14983 1001 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 BANF1O75531 89 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 BRAFP15056 766 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 CREB1P16220 341 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 METTL7BQ6UX53 244 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 HVCN1Q96D96 273 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 SNF8Q96H20 258 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 ZBED3Q96IU2 234 aaPredicted RBP12.67□□□□□ -0.38
SMPD4-213ENST00000454468 RBM15Q96T37 977 aaKnown RBP eCLIP12.67□□□□□ -0.382e-7■■■■□ 19.9
SMPD4-213ENST00000454468 CGRRF1Q99675 332 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 NCAPGQ9BPX3 1015 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 STMN4Q9H169 189 aaPredicted RBP12.67□□□□□ -0.38
SMPD4-213ENST00000454468 SNCAIPQ9Y6H5 919 aa12.67□□□□□ -0.38
SMPD4-213ENST00000454468 OGTO15294 1046 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 EDN1P05305 212 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 INSRRP14616 1297 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 OSBPP22059 807 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 ECHS1P30084 290 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 EIF3BP55884 814 aaKnown RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 NFX1Q12986 1120 aaKnown RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 TTLL4Q14679 1199 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PLCB4Q15147 1175 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C6orf118Q5T5N4 469 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C1orf228Q6PIY5 440 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C12orf56Q8IXR9 622 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C4orf33Q8N1A6 199 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 AFG1LQ8WV93 481 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 MAIP1Q8WWC4 291 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 NIF3L1Q9GZT8 377 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PGAP2Q9UHJ9 254 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 HES2Q9Y543 173 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 IKBKGQ9Y6K9 419 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 CES2O00748 559 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PROSCO94903 275 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C4BPAP04003 597 aaKnown RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 CYP1A2P05177 515 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PDGFRBP09619 1106 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 POLR2BP30876 1174 aaKnown RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PEX5P50542 639 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 MAMLD1Q13495 774 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 MAP1SQ66K74 1059 aaPredicted RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 PPP1R21Q6ZMI0 780 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 HERPUD2Q9BSE4 406 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 RNPEPQ9H4A4 650 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 HOMER3Q9NSC5 361 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 DNPEPQ9ULA0 475 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 STK38LQ9Y2H1 464 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 MROH7Q68CQ1 1323 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 TNFRSF8P28908 595 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 KRT81Q14533 505 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 QPCTQ16769 361 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 C9orf131Q5VYM1 1079 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 LRIG3Q6UXM1 1119 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 LBX2Q6XYB7 198 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 OR6B3Q8NGW1 331 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 TCP11Q8WWU5 503 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 FAM149B1Q96BN6 582 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 RUNDC3BQ96NL0 473 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 ADPGKQ9BRR6 497 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 METTL5Q9NRN9 209 aaKnown RBP12.66□□□□□ -0.38
SMPD4-213ENST00000454468 GPATCH2LQ9NWQ4 482 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 KLK14Q9P0G3 267 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 SNX9Q9Y5X1 595 aa12.66□□□□□ -0.38
SMPD4-213ENST00000454468 A0A087WUV0 522 aaPredicted RBP12.65□□□□□ -0.38
SMPD4-213ENST00000454468 RASA4BC9J798 803 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 FZD9O00144 591 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 RASA4O43374 803 aa12.65□□□□□ -0.38
SMPD4-213ENST00000454468 CST8O60676 142 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms