RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 EXTL3O43909 919 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 MICAL2O94851 1124 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 NPR3P17342 541 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 HOXD13P35453 343 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 TAF6P49848 677 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 CLCN5P51795 746 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 PTPN5P54829 565 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 ASIC1P78348 528 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 TCF15Q12870 199 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 PARM1Q6UWI2 310 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 UNC13DQ70J99 1090 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 TMEM105Q8N8V8 129 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 SPRYD3Q8NCJ5 442 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 GLIS3Q8NEA6 775 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 BORCS6Q96GS4 357 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 ZNF560Q96MR9 790 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 PYM1Q9BRP8 204 aaKnown RBP13.02□□□□□ -0.33
USP40-210ENST00000454354 MFSD1Q9H3U5 465 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 FAM13BQ9NYF5 915 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 RBAKQ9NYW8 714 aaPredicted RBP13.02□□□□□ -0.33
USP40-210ENST00000454354 DSEQ9UL01 958 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 MRPS23Q9Y3D9 190 aaKnown RBP13.02□□□□□ -0.33
USP40-210ENST00000454354 YIPF1Q9Y548 306 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 UBE4BO95155 1302 aa13.02□□□□□ -0.33
USP40-210ENST00000454354 FANCMQ8IYD8 2048 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 VPS13AQ96RL7 3174 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 OR4Q2P0C623 313 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 CEBPBP17676 345 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 AOC1P19801 751 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 PNPLA4P41247 253 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 EPHA5P54756 1037 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 TWF1Q12792 350 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 FAM26FQ5R3K3 315 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 ARMCX5Q6P1M9 558 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 SIX5Q8N196 739 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 GPD1LQ8N335 351 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 ELMOD1Q8N336 334 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 LEMD2Q8NC56 503 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 CXorf38Q8TB03 319 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 ZNF507Q8TCN5 953 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 ING5Q8WYH8 240 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 HPS3Q969F9 1004 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 CORO1BQ9BR76 489 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 CRISPLD1Q9H336 500 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 CEP72Q9P209 647 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 HSFX1Q9UBD0 423 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 FBXL21Q9UKT6 434 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 ZDHHC9Q9Y397 364 aa13.01□□□□□ -0.33
USP40-210ENST00000454354 WDR87Q6ZQQ6 2873 aa13□□□□□ -0.33
USP40-210ENST00000454354 PVALEFA0A1B0GWK0 134 aa13□□□□□ -0.33
USP40-210ENST00000454354 MTMR11A4FU01 709 aa13□□□□□ -0.33
USP40-210ENST00000454354 KRBA1A5PL33 1030 aa13□□□□□ -0.33
USP40-210ENST00000454354 ZNF197O14709 1029 aa13□□□□□ -0.33
USP40-210ENST00000454354 GALR2O43603 387 aaPredicted RBP13□□□□□ -0.33
USP40-210ENST00000454354 CFHP08603 1231 aa13□□□□□ -0.33
USP40-210ENST00000454354 PLD1Q13393 1074 aa13□□□□□ -0.33
USP40-210ENST00000454354 SV2CQ496J9 727 aa13□□□□□ -0.33
USP40-210ENST00000454354 CENPPQ6IPU0 288 aa13□□□□□ -0.33
USP40-210ENST00000454354 POTEHQ6S545 545 aa13□□□□□ -0.33
USP40-210ENST00000454354 LRRC52Q8N7C0 313 aa13□□□□□ -0.33
USP40-210ENST00000454354 C1orf127Q8N9H9 656 aa13□□□□□ -0.33
USP40-210ENST00000454354 OR10T2Q8NGX3 314 aa13□□□□□ -0.33
USP40-210ENST00000454354 GPR152Q8TDT2 470 aa13□□□□□ -0.33
USP40-210ENST00000454354 CACTINQ8WUQ7 758 aaKnown RBP13□□□□□ -0.33
USP40-210ENST00000454354 RTP3Q9BQQ7 232 aa13□□□□□ -0.33
USP40-210ENST00000454354 RPP25Q9BUL9 199 aaKnown RBP13□□□□□ -0.33
USP40-210ENST00000454354 PCIF1Q9H4Z3 704 aa13□□□□□ -0.33
USP40-210ENST00000454354 ITGA11Q9UKX5 1188 aa13□□□□□ -0.33
USP40-210ENST00000454354 COL4A3Q01955 1670 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 GOLGA8IPA6NC78 632 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 GOLGA8JA6NMD2 632 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 KPNA7A9QM74 516 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 CYB561D2O14569 222 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 TGFB1I1O43294 461 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 ACTN4O43707 911 aaKnown RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 MOSPD3O75425 235 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 ECI2O75521 394 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 SLFN14P0C7P3 912 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 FCARP24071 287 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 POLR2BP30876 1174 aaKnown RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 CCR2P41597 374 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 SNRPFP62306 86 aaKnown RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 TFAMQ00059 246 aaKnown RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 BMT2Q1RMZ1 405 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 IQCEQ6IPM2 695 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 PDZD4Q76G19 769 aaPredicted RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 METTL23Q86XA0 190 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 SCFD1Q8WVM8 642 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 TCEAL4Q96EI5 215 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 ZNF512Q96ME7 567 aaPredicted RBP12.99□□□□□ -0.33
USP40-210ENST00000454354 PGLYRP2Q96PD5 576 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 TMEM209Q96SK2 561 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 LRRC3Q9BY71 257 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 ZCWPW1Q9H0M4 648 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 DNAJC25Q9H1X3 360 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 KIAA1586Q9HCI6 787 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 PDE11AQ9HCR9 933 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 ASAH2Q9NR71 780 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 HSPBP1Q9NZL4 362 aa12.99□□□□□ -0.33
USP40-210ENST00000454354 CA14Q9ULX7 337 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms