RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ZNF268Q14587 947 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 MORF4L2Q15014 288 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SPATA21Q7Z572 469 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 DNERQ8NFT8 737 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 DEPTORQ8TB45 409 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 NKD2Q969F2 451 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 C11orf70Q9BRQ4 267 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 IMPG2Q9BZV3 1241 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.47□□□□□ -0.097e-8■■■■■ 186.3
COL6A3-207ENST00000433762 CYP39A1Q9NYL5 469 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SHOC2Q9UQ13 582 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 IGKV6D-21A0A0A0MT36 114 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TCRBV5S1A1TA0A578 114 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 K7ERI5 159 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SMAPO00193 183 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 OATP04181 439 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 MAGEA4P43358 317 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 IFNAR2P48551 515 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 IL9RQ01113 521 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 PIGHQ14442 188 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 KCTD19Q17RG1 926 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TBC1D10BQ4KMP7 808 aaPredicted RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 ZC3H12AQ5D1E8 599 aaKnown RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SNRNP48Q6IEG0 339 aaKnown RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TMEM270Q6UE05 265 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 POLNQ7Z5Q5 900 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 WDR49Q8IV35 697 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 BRSK2Q8IWQ3 736 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF280CQ8ND82 737 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 MAML1Q92585 1016 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 FAXDC2Q96IV6 333 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SLITRK1Q96PX8 696 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TEX13BQ9BXU2 312 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 RXFP1Q9HBX9 757 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 APOBEC3GQ9HC16 384 aaKnown RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 SSU72Q9NP77 194 aaKnown RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 NAALADL1Q9UQQ1 740 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 RIPK3Q9Y572 518 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 ITGAVP06756 1048 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 ALADP13716 330 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 GLRA2P23416 452 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 STX2P32856 288 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 NEDD9Q14511 834 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 MTFR1Q15390 333 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC38Q502W7 563 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 ALLCQ8N6M5 410 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 RBM15Q96T37 977 aaKnown RBP eCLIP14.46□□□□□ -0.09
COL6A3-207ENST00000433762 MSTO1Q9BUK6 570 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 FGFR1OP2Q9NVK5 253 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 PCDHGC3Q9UN70 934 aa14.46□□□□□ -0.09
COL6A3-207ENST00000433762 SMG5Q9UPR3 1016 aaKnown RBP14.46□□□□□ -0.09
COL6A3-207ENST00000433762 FAM47DPA6NHR8 397 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 ASS1P00966 412 aaKnown RBP14.46□□□□□ -0.1
COL6A3-207ENST00000433762 EZRP15311 586 aaKnown RBP14.46□□□□□ -0.1
COL6A3-207ENST00000433762 SOX10P56693 466 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 SPDYAQ5MJ70 313 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 NUGGCQ68CJ6 796 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 PCGF5Q86SE9 256 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 ZNF302Q9NR11 478 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 SLC24A2Q9UI40 661 aa14.46□□□□□ -0.1
COL6A3-207ENST00000433762 FAM170AA1A519 330 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 ATP6V1G2O95670 118 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 EFNA5P52803 228 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 NCOA4Q13772 614 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 MTERF2Q49AM1 385 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 FAM228AQ86W67 206 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 ZNF606Q8WXB4 792 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 SLC7A3Q8WY07 619 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 TGS1Q96RS0 853 aaKnown RBP14.45□□□□□ -0.1
COL6A3-207ENST00000433762 MYCBPQ99417 103 aaPredicted RBP14.45□□□□□ -0.1
COL6A3-207ENST00000433762 PCDH9Q9HC56 1237 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 STARD13Q9Y3M8 1113 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 PTPRJQ12913 1337 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 A0A0G2JMZ2 1700 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 GAS2O43903 313 aaKnown RBP14.45□□□□□ -0.1
COL6A3-207ENST00000433762 ATP5HO75947 161 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 TSHRP16473 764 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 EIF4BP23588 611 aaKnown RBP14.45□□□□□ -0.1
COL6A3-207ENST00000433762 NCALDP61601 193 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 P3H1Q32P28 736 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 TRABD2AQ86V40 505 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 TMEM35BQ8NCS4 154 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 HAPLN2Q9GZV7 340 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 KCNK9Q9NPC2 374 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 ABCF3Q9NUQ8 709 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 PIM2Q9P1W9 311 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 KLHL14Q9P2G3 628 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 STRIP2Q9ULQ0 834 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 NUB1Q9Y5A7 615 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 CD2APQ9Y5K6 639 aa14.45□□□□□ -0.1
COL6A3-207ENST00000433762 ZNF541Q9H0D2 1346 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 BRCA1P38398 1863 aaKnown RBP14.44□□□□□ -0.1
COL6A3-207ENST00000433762 ALOX15BO15296 676 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 UBOX5O94941 541 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 CCNB1P14635 433 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 NQO1P15559 274 aaKnown RBP14.44□□□□□ -0.1
COL6A3-207ENST00000433762 MAP2K2P36507 400 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 ACOT2P49753 483 aa14.44□□□□□ -0.1
COL6A3-207ENST00000433762 VCPP55072 806 aaKnown RBP14.44□□□□□ -0.1
COL6A3-207ENST00000433762 YWHAEP62258 255 aaKnown RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms