RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 MIA3Q5JRA6 1907 aa12.55□□□□□ -0.4
USP4-204ENST00000416417 OR6C75A6NL08 312 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 ADRB2P07550 413 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 SOX9P48436 509 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 MCM2P49736 904 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 EPHB3P54753 998 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 EPHA5P54756 1037 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 WNT7BP56706 349 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 GTF2BQ00403 316 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 MTAPQ13126 283 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 GPR17Q13304 367 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 PTPAQ15257 358 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 SLC39A12Q504Y0 691 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 CENPPQ6IPU0 288 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 ZC3H14Q6PJT7 736 aaKnown RBP12.54□□□□□ -0.4
USP4-204ENST00000416417 BRAPQ7Z569 592 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 SUMF1Q8NBK3 374 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 STKLD1Q8NE28 680 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 CLDN23Q96B33 292 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 LRRC3BQ96PB8 259 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 PANK2Q9BZ23 570 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 OSBPL6Q9BZF3 934 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 FBXO2Q9UK22 296 aaPredicted RBP12.54□□□□□ -0.4
USP4-204ENST00000416417 PIAS3Q9Y6X2 628 aa12.54□□□□□ -0.4
USP4-204ENST00000416417 RIF1Q5UIP0 2472 aaKnown RBP12.54□□□□□ -0.4
USP4-204ENST00000416417 DMXL1Q9Y485 3027 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 MYMKA6NI61 221 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 PIRO00625 290 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ZNF263O14978 683 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 SLC26A4O43511 780 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 XPOTO43592 962 aaKnown RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 KINO60870 393 aaKnown RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 MICAL2O94851 1124 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ODC1P11926 461 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 PSMC3P17980 439 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 TYMPP19971 482 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 DDIT3P35638 169 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ALDH1A3P47895 512 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 CYP4F8P98187 520 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 KYAT1Q16773 422 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 CRELD2Q6UXH1 353 aaPredicted RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 GAREM2Q75VX8 874 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 EFCAB13Q8IY85 973 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ZNF687Q8N1G0 1237 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 GIPC2Q8TF65 315 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 FAM3CQ92520 227 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 RMDN1Q96DB5 314 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ZFYVE19Q96K21 471 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 SEPT5Q99719 369 aaPredicted RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 PYM1Q9BRP8 204 aaKnown RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 FGFBP2Q9BYJ0 223 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 SEMA4AQ9H3S1 761 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 AGO2Q9UKV8 859 aaKnown RBP12.53□□□□□ -0.4
USP4-204ENST00000416417 DCHS1Q96JQ0 3298 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 PATJQ8NI35 1801 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 CACNA1IQ9P0X4 2223 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 SPTBN4Q9H254 2564 aa12.53□□□□□ -0.4
USP4-204ENST00000416417 ANO9A1A5B4 782 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 SLC38A8A6NNN8 435 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 CYB561D2O14569 222 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 BMP15O95972 392 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 CCNE1P24864 410 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 GABRR2P28476 465 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 ADSSP30520 456 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 HOXC13P31276 330 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 RESTQ13127 1097 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 CUL4AQ13619 759 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 MGAT5BQ3V5L5 792 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 WSCD1Q658N2 575 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 ARMCX5Q6P1M9 558 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 ZNF720Q7Z2F6 126 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 DNAJB7Q7Z6W7 309 aaPredicted RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 LRRTM3Q86VH5 581 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 ARID3BQ8IVW6 561 aaPredicted RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 KRI1Q8N9T8 703 aaKnown RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 FAM200AQ8TCP9 573 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 NOC3LQ8WTT2 800 aaKnown RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 POMGNT1Q8WZA1 660 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 DNASE1L2Q92874 299 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 KCNN1Q92952 543 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 IRF7Q92985 503 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 SAAL1Q96ER3 474 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 MKNK1Q9BUB5 465 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 CCSER1Q9C0I3 900 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 SMG9Q9H0W8 520 aaKnown RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 ATXN3LQ9H3M9 355 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 LMAN1LQ9HAT1 526 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 RBM12Q9NTZ6 932 aaKnown RBP12.52□□□□□ -0.4
USP4-204ENST00000416417 DPP3Q9NY33 737 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 FBXO4Q9UKT5 387 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 MAFFQ9ULX9 164 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 FAM186AA6NE01 2351 aa12.52□□□□□ -0.4
USP4-204ENST00000416417 TICRRQ7Z2Z1 1910 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 COL4A2P08572 1712 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 A0A087X0B3 334 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 GOLGA8IPA6NC78 632 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 GOLGA8JA6NMD2 632 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 NCAM2O15394 837 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 CASP5P51878 434 aa12.52□□□□□ -0.41
USP4-204ENST00000416417 MYBPC2Q14324 1141 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms