RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 FKBP1CQ5VVH2 108 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 ANKRD22Q5VYY1 191 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 CYP4F22Q6NT55 531 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 FAM47EQ6ZV65 393 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 SYDE1Q6ZW31 735 aaPredicted RBP10.46□□□□□ -0.74
SS18-203ENST00000415083 TMEM143Q96AN5 459 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 RBM15Q96T37 977 aaKnown RBP eCLIP10.46□□□□□ -0.74
SS18-203ENST00000415083 MAK16Q9BXY0 300 aaKnown RBP10.46□□□□□ -0.74
SS18-203ENST00000415083 KIAA1683Q9H0B3 1180 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 POLR3FQ9H1D9 316 aaPredicted RBP10.46□□□□□ -0.74
SS18-203ENST00000415083 TMX4Q9H1E5 349 aaPredicted RBP10.46□□□□□ -0.74
SS18-203ENST00000415083 HOMER3Q9NSC5 361 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 CYTH4Q9UIA0 394 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 SUFUQ9UMX1 484 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 PCDHA10Q9Y5I2 948 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 WDR90Q96KV7 1748 aa10.46□□□□□ -0.74
SS18-203ENST00000415083 TMEM191CA6NGB0 347 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 PSTPIP1O43586 416 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 EXTL3O43909 919 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TYROBPO43914 113 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 ASNSP08243 561 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TMEM191BP0C7N4 346 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 GLRA2P23416 452 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 GJC1P36383 396 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TNFSF9P41273 254 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 NEDD9Q14511 834 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 BRDTQ58F21 947 aaPredicted RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 RNASEH2BQ5TBB1 312 aaKnown RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 RNF43Q68DV7 783 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TMEM270Q6UE05 265 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 SLC7A6OSQ96CW6 309 aaPredicted RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 CYP26B1Q9NR63 512 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 USTQ9Y2C2 406 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 ARL2BPQ9Y2Y0 163 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 PAPPA2Q9BXP8 1791 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 DNAH12Q6ZR08 3092 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TCRBV7S3A2A0A539 114 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 ZC3H11AO75152 810 aaKnown RBP eCLIP10.45□□□□□ -0.74
SS18-203ENST00000415083 ANP32DO95626 131 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 KRT76Q01546 638 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 PRKCEQ02156 737 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 SP4Q02446 784 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 NFX1Q12986 1120 aaKnown RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 DNAJC3Q13217 504 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TMED2Q15363 201 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 AGGF1Q8N302 714 aaeCLIP10.45□□□□□ -0.74
SS18-203ENST00000415083 ALLCQ8N6M5 410 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 CNKSR1Q969H4 720 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TMEM237Q96Q45 408 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 RPAP3Q9H6T3 665 aaPredicted RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 DNALI1O14645 258 aaPredicted RBP10.45□□□□□ -0.74
SS18-203ENST00000415083 NR3C2P08235 984 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 MMP8P22894 467 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 SFNP31947 248 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 ACVR2BQ13705 512 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 KAZNQ674X7 775 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 MCF2L2Q86YR7 1114 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 EXD1Q8NHP7 514 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TFAP2BQ92481 460 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 KIFAP3Q92845 792 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 HAUS1Q96CS2 278 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 IWS1Q96ST2 819 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 EXOC7Q9UPT5 735 aa10.45□□□□□ -0.74
SS18-203ENST00000415083 TLR3O15455 904 aaKnown RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 ATG7O95352 703 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 MTM1Q13496 603 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 FNBP1LQ5T0N5 605 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 CCDC50Q8IVM0 306 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 RHOT1Q8IXI2 618 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 C4orf33Q8N1A6 199 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 NSMCE1Q8WV22 266 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 PCYT2Q99447 389 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 TAOK3Q9H2K8 898 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 ZNF214Q9UL59 606 aaPredicted RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 ZMYND8Q9ULU4 1186 aaPredicted RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 FARP1Q9Y4F1 1045 aaPredicted RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 CFAP73A6NFT4 308 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 CDH16O75309 829 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 ABHD2P08910 425 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 MYBL1P10243 752 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 IL1R2P27930 398 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 GNA15P30679 374 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 NSFP46459 744 aaKnown RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 ACTR2P61160 394 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 NOP14P78316 857 aaKnown RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 MYO1EQ12965 1108 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 MAPK6Q16659 721 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 CTC1Q2NKJ3 1217 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 RAB6CQ53S08 254 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 ARHGEF16Q5VV41 709 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 CAPN12Q6ZSI9 719 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 CROCCP2Q86T23 111 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 ZNF677Q86XU0 584 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 RBBP8NLQ8NC74 664 aaPredicted RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 C10orf82Q8WW14 230 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 ZNF606Q8WXB4 792 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 PRR11Q96HE9 360 aaPredicted RBP10.44□□□□□ -0.74
SS18-203ENST00000415083 RAB6CQ9H0N0 254 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 R3HDMLQ9H3Y0 253 aa10.44□□□□□ -0.74
SS18-203ENST00000415083 SAYSD1Q9NPB0 183 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms