RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 SYT11Q9BT88 431 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 HTATIP2Q9BUP3 242 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 SPTLC3Q9NUV7 552 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 CNTN6Q9UQ52 1028 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 NME7Q9Y5B8 376 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 PCDHB4Q9Y5E5 795 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 KIAA1671Q9BY89 1806 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 KPNA7A9QM74 516 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 KIF4AO95239 1232 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 PNPLA4P41247 253 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 RNASELQ05823 741 aaKnown RBP10.36□□□□□ -0.75
RIF1-202ENST00000414861 PPIGQ13427 754 aaKnown RBP eCLIP10.36□□□□□ -0.751e-6■■□□□ 12.1
RIF1-202ENST00000414861 SOWAHAQ2M3V2 549 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 ASTE1Q2TB18 679 aaPredicted RBP10.36□□□□□ -0.75
RIF1-202ENST00000414861 ZNF394Q53GI3 561 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 FAM117BQ6P1L5 589 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 NOP9Q86U38 636 aaKnown RBP10.36□□□□□ -0.75
RIF1-202ENST00000414861 RBBP8NLQ8NC74 664 aaPredicted RBP10.36□□□□□ -0.75
RIF1-202ENST00000414861 ACRBPQ8NEB7 543 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 TOP1MTQ969P6 601 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 JAKMIP2Q96AA8 810 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 FAM81BQ96LP2 452 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 TWNKQ96RR1 684 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 MRPL45Q9BRJ2 306 aaKnown RBP10.36□□□□□ -0.75
RIF1-202ENST00000414861 NRDE2Q9H7Z3 1164 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 L1RE1Q9UN81 338 aa10.36□□□□□ -0.75
RIF1-202ENST00000414861 FAM170AA1A519 330 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 I3L4J1 428 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 ZNF263O14978 683 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 HCRTO43612 131 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 B3GAT3O94766 335 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 P4HA1P13674 534 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 RPL9P32969 192 aaKnown RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 PBX3P40426 434 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 KIF11P52732 1056 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 MAPK8IP2Q13387 824 aaPredicted RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 SV2CQ496J9 727 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 PALB2Q86YC2 1186 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 WHAMMQ8TF30 809 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 KBTBD7Q8WVZ9 684 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.35□□□□□ -0.758e-7■■■□□ 18.4
RIF1-202ENST00000414861 RC3H2Q9HBD1 1191 aaKnown RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 GDAP2Q9NXN4 497 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 CXXC1Q9P0U4 656 aaPredicted RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 NOCTQ9UK39 431 aaKnown RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 A0A0U1RQJ8 604 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 SSU72P8A0A1W2PR75 194 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 HOXA2O43364 376 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 CILPO75339 1184 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 DGKIO75912 1065 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 BAIAP3O94812 1187 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 NDUFA10O95299 355 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 CYP11B1P15538 503 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 AARSP49588 968 aaKnown RBP eCLIP10.35□□□□□ -0.75
RIF1-202ENST00000414861 INCA1Q0VD86 236 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 TIGD5Q53EQ6 642 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 TMEM240Q5SV17 173 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 TAF3Q5VWG9 929 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 LIMS2Q7Z4I7 341 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 LNX1Q8TBB1 728 aaPredicted RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 ATRIPQ8WXE1 791 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 FAXDC2Q96IV6 333 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 ELOVL4Q9GZR5 314 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 CYP3A43Q9HB55 503 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 KANSL3Q9P2N6 904 aa10.35□□□□□ -0.75
RIF1-202ENST00000414861 PRG3Q9Y2Y8 225 aaPredicted RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 REXO2Q9Y3B8 237 aaKnown RBP10.35□□□□□ -0.75
RIF1-202ENST00000414861 A0A087X0T9 212 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 USP27XA6NNY8 438 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 NRDCO43847 1150 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 AMHP03971 560 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 FAM228BP0C875 321 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 BRCC3P46736 316 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 GFPT1Q06210 699 aaPredicted RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 PDCL2Q8N4E4 241 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 KIAA1524Q8TCG1 905 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 DDX1Q92499 740 aaKnown RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 DPF3Q92784 378 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 DDX27Q96GQ7 796 aaKnown RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 SENP8Q96LD8 212 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 CCDC42Q96M95 316 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 UROC1Q96N76 676 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 ZSWIM1Q9BR11 485 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 ADAMTS1Q9UHI8 967 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 EPN1Q9Y6I3 576 aaPredicted RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 ZBBXA8MT70 800 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 DDX3XO00571 662 aaKnown RBP eCLIP10.34□□□□□ -0.752e-13■■□□□ 11.4
RIF1-202ENST00000414861 CYB561D2O14569 222 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 EFCAB14O75071 495 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 MMEP08473 750 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 CFHP08603 1231 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 CHRNB2P17787 502 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 SSTR3P32745 418 aaPredicted RBP10.34□□□□□ -0.75
RIF1-202ENST00000414861 OR1G1P47890 313 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 PDE6CP51160 858 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 NDST1P52848 882 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 RAD23BP54727 409 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 CYP27A1Q02318 531 aa10.34□□□□□ -0.75
RIF1-202ENST00000414861 WSCD1Q658N2 575 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms