RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PHGDHO43175 533 aaKnown RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ZNF12P17014 697 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 CHN2P52757 468 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 DDR2Q16832 855 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 MCPH1Q8NEM0 835 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 PPHLN1Q8NEY8 458 aaKnown RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 PLEKHA5Q9HAU0 1116 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 DYRK4Q9NR20 520 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 AMACRQ9UHK6 382 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 LRRIQ1Q96JM4 1722 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 ADGRA2Q96PE1 1338 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 GNB5O14775 395 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 SKAP2O75563 359 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-206ENST00000409809 MIS18BP1Q6P0N0 1132 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 PM20D2Q8IYS1 436 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 TMEM79Q9BSE2 394 aa13.46□□□□□ -0.25
COL6A3-206ENST00000409809 RRM2P31350 389 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 BCAR1P56945 870 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 KCNH2Q12809 1159 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 RBBP7Q16576 425 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 KCNF1Q9H3M0 494 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 NEURL1BA8MQ27 555 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 ASZ1Q8WWH4 475 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 AS3MTQ9HBK9 375 aa13.46□□□□□ -0.26
COL6A3-206ENST00000409809 TET3O43151 1660 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 MAPRE1Q15691 268 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 MAEAQ7L5Y9 396 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF398Q8TD17 642 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 PRDM15P57071 1507 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 GMFBP60983 142 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 KIAA0408Q6ZU52 694 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 SH2D3CQ8N5H7 860 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 STK33Q9BYT3 514 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 USP44Q9H0E7 712 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 SLC24A2Q9UI40 661 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 DMTF1Q9Y222 760 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 CCDC162PA2VCL2 907 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 CD3EAPO15446 510 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 NR1I3Q14994 352 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 THOC7Q6I9Y2 204 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 RINLQ6ZS11 566 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 TSHZ1Q6ZSZ6 1077 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 ERO1BQ86YB8 467 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 IP6K1Q92551 441 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 SNAP91O60641 907 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 UBE3AQ05086 875 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 MTFR1Q15390 333 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 UBE2Q1Q7Z7E8 422 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 KYQ8NBH2 561 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 PAIP1Q9H074 479 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 KCND1Q9NSA2 647 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 DDX20Q9UHI6 824 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 ZCCHC18P0CG32 403 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 ATP6V1C1P21283 382 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 TRAF3Q13114 568 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 CDK12Q9NYV4 1490 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 PREX2Q70Z35 1606 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 GOLGA8SH3BPF8 625 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 C4orf50Q6ZRC1 276 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 RNASE11Q8TAA1 199 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 RBM46Q8TBY0 533 aaKnown RBP13.45□□□□□ -0.26
COL6A3-206ENST00000409809 VPS33AQ96AX1 596 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 PAK5Q9P286 719 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 GGA1Q9UJY5 639 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 ZBTB1Q9Y2K1 713 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 MAPK1P28482 360 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 TNFRSF8P28908 595 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 SDC4P31431 198 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 HPS1Q92902 700 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 TUFT1Q9NNX1 390 aa13.45□□□□□ -0.26
COL6A3-206ENST00000409809 C1orf232A0A0U1RR37 186 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 AIM2O14862 343 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ECM2O94769 699 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-206ENST00000409809 POLBP06746 335 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 TIMM10P62072 90 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ZBTB49Q6ZSB9 765 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 SMCR8Q8TEV9 937 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-206ENST00000409809 TEX13BQ9BXU2 312 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 AK5Q9Y6K8 562 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 SARSP49591 514 aaKnown RBP13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF677Q86XU0 584 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 AADATQ8N5Z0 425 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 KBTBD8Q8NFY9 601 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 SUN5Q8TC36 379 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 RNF139Q8WU17 664 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ZKSCAN4Q969J2 545 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-206ENST00000409809 BTBD10Q9BSF8 475 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 CHID1Q9BWS9 393 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 PTPRTO14522 1441 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 CCNA2P20248 432 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 NUDT2P50583 147 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 SNX30Q5VWJ9 437 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 LINC00523Q86TU6 105 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 ZFP42Q96MM3 310 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 TMBIM4Q9HC24 238 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 L1RE1Q9UN81 338 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 UFL1O94874 794 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 FASP25445 335 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 TNFAIP2Q03169 654 aa13.44□□□□□ -0.26
COL6A3-206ENST00000409809 BARGINQ6ZT62 677 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms