RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ABRAQ8N0Z2 381 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 MTMR14Q8NCE2 650 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 CD101Q93033 1021 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 PCYT2Q99447 389 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 EFCC1Q9HA90 598 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 HMGXB4Q9UGU5 601 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 CD48P09326 243 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 ZNF286BP0CG31 522 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 STX2P32856 288 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 NOMO3P69849 1222 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 MYBPC2Q14324 1141 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 SIX1Q15475 284 aaPredicted RBP14.18□□□□□ -0.14
VPS54-203ENST00000409558 RHOT1Q8IXI2 618 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 C7orf31Q8N865 590 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 SPOCK2Q92563 424 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 JPH2Q9BR39 696 aaPredicted RBP14.18□□□□□ -0.14
VPS54-203ENST00000409558 DCLK3Q9C098 648 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 MINDY3Q9H8M7 445 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 BAIAP2L1Q9UHR4 511 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 DNM1LO00429 736 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 TXNP10599 105 aaKnown RBP14.18□□□□□ -0.14
VPS54-203ENST00000409558 CETPP11597 493 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 ERFP50548 548 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 OGDHQ02218 1023 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 EXOC3L1Q86VI1 746 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 SNF8Q96H20 258 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 OSBPL7Q9BZF2 842 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 GPATCH2LQ9NWQ4 482 aa14.18□□□□□ -0.14
VPS54-203ENST00000409558 EIF4E1BA6NMX2 242 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 GARTP22102 1010 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 BASP1P80723 227 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 NFX1Q12986 1120 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 EFCAB12Q6NXP0 572 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 DENND1BQ6P3S1 775 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 C12orf56Q8IXR9 622 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 GPATCH11Q8N954 259 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 JOSD2Q8TAC2 188 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 LPIN3Q9BQK8 851 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 SPATC1LQ9H0A9 340 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 DIS3Q9Y2L1 958 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 PROSCO94903 275 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 HNRNPH1P31943 449 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 RFC1P35251 1148 aaPredicted RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 GCNT1Q02742 428 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 BYSLQ13895 437 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 PSMD6Q15008 389 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 HIBCHQ6NVY1 386 aaPredicted RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 KCTD17Q8N5Z5 321 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 REPS2Q8NFH8 660 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 DDX27Q96GQ7 796 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 MAGED2Q9UNF1 606 aaPredicted RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 EXOC1LA0A1B0GW35 172 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 RASA4BC9J798 803 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 RASA4O43374 803 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 FARP2O94887 1054 aaPredicted RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 ITGB3P05106 788 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 CETN2P41208 172 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 PSMC1P62191 440 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 BBS9Q3SYG4 887 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 SH3PXD2AQ5TCZ1 1133 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 FEZF2Q8TBJ5 459 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 SEPT1Q8WYJ6 367 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 HEXIM2Q96MH2 286 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 FAM49BQ9NUQ9 324 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 USP2O75604 605 aaPredicted RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 C6orf118Q5T5N4 469 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 ZBTB8OSQ8IWT0 167 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 DCPSQ96C86 337 aaKnown RBP14.17□□□□□ -0.14
VPS54-203ENST00000409558 AAASQ9NRG9 546 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 PCYOX1Q9UHG3 505 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 HES2Q9Y543 173 aa14.17□□□□□ -0.14
VPS54-203ENST00000409558 GTF2A1P52655 376 aaPredicted RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 ZNF280AP59817 542 aaPredicted RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 ATL2Q8NHH9 583 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 HVCN1Q96D96 273 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 RNPEPQ9H4A4 650 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 CLEC11AQ9Y240 323 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 COQ4Q9Y3A0 265 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 NR2E3Q9Y5X4 410 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 STAM2O75886 525 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 RARGP13631 454 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 KCTD2Q14681 263 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 SLMAPQ14BN4 828 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 CCDC197Q8NCU1 140 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 NTPCRQ9BSD7 190 aaKnown RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 MIS12Q9H081 205 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 ASCC2Q9H1I8 757 aaPredicted RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 METTL5Q9NRN9 209 aaKnown RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 ABCF3Q9NUQ8 709 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 NINJ2Q9NZG7 142 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 PARP2Q9UGN5 583 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 CEP83Q9Y592 693 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 C10orf71Q711Q0 1435 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 NFICP08651 508 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 EIF3BP55884 814 aaKnown RBP14.16□□□□□ -0.14
VPS54-203ENST00000409558 BPIFB4P59827 614 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 PPP2R5EQ16537 467 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 AGBL2Q5U5Z8 902 aa14.16□□□□□ -0.14
VPS54-203ENST00000409558 C1orf228Q6PIY5 440 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms