RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 NR1I3Q14994 352 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 EXOC3L4Q17RC7 722 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 DSTYKQ6XUX3 929 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 LIMS2Q7Z4I7 341 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 GCNT4Q9P109 453 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 LZTS1Q9Y250 596 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 PCDHGC5Q9Y5F6 944 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 UNC80Q8N2C7 3258 aa17.12■□□□□ 0.33
HMGA1-204ENST00000401473 A0A1B0GTH6 734 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 CSPG5O95196 566 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 SERPINC1P01008 464 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 IRS1P35568 1242 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 CDH8P55286 799 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 CETN1Q12798 172 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 KIAA0319Q5VV43 1072 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 WSCD1Q658N2 575 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 PHLDB3Q6NSJ2 640 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 GBP6Q6ZN66 633 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 AUTS2Q8WXX7 1259 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 TAF4BQ92750 862 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 MMS19Q96T76 1030 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 MTMR10Q9NXD2 777 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 PUF60Q9UHX1 559 aaKnown RBP17.11■□□□□ 0.33
HMGA1-204ENST00000401473 L1RE1Q9UN81 338 aa17.11■□□□□ 0.33
HMGA1-204ENST00000401473 KLK7P49862 253 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 UBXN1Q04323 297 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 USP41Q3LFD5 358 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ZNF667Q5HYK9 610 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 TRIM65Q6PJ69 517 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 PDCL2Q8N4E4 241 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 CDX2Q99626 313 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ARID3AQ99856 593 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 TTPALQ9BTX7 342 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 INTS2Q9H0H0 1204 aaKnown RBP17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ZBP1Q9H171 429 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 SDCBP2Q9H190 292 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ATG2AQ2TAZ0 1938 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 C2CD2LO14523 706 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 LILRB3O75022 631 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 CYP11A1P05108 521 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 WEE2P0C1S8 567 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 PAX3P23760 479 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ASPAP45381 313 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 UBASH3AP57075 661 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 UBE3AQ05086 875 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 ELAVL2Q12926 359 aaKnown RBP17.1■□□□□ 0.33
HMGA1-204ENST00000401473 MRPL58Q14197 206 aaKnown RBP17.1■□□□□ 0.33
HMGA1-204ENST00000401473 WDR44Q5JSH3 913 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 GJB7Q6PEY0 223 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 TMC7Q7Z402 723 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 LNX1Q8TBB1 728 aaPredicted RBP17.1■□□□□ 0.33
HMGA1-204ENST00000401473 IMPG2Q9BZV3 1241 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 SIX2Q9NPC8 291 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 PCDHB8Q9UN66 801 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 NME7Q9Y5B8 376 aa17.1■□□□□ 0.33
HMGA1-204ENST00000401473 SYN3O14994 580 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 TPM2P07951 284 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 CTSAP10619 480 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 RAP1GAPP47736 663 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 DSG1Q02413 1049 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 VARS2Q5ST30 1063 aaKnown RBP17.09■□□□□ 0.33
HMGA1-204ENST00000401473 PRSS55Q6UWB4 352 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-204ENST00000401473 RSPO2Q6UXX9 243 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-204ENST00000401473 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.09■□□□□ 0.33
HMGA1-204ENST00000401473 DPH6Q7L8W6 267 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 ARHGEF19Q8IW93 802 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 APPL2Q8NEU8 664 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 KBTBD7Q8WVZ9 684 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 MYLIPQ8WY64 445 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 KAT5Q92993 513 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 TCF25Q9BQ70 676 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 SMYD3Q9H7B4 428 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 TLR9Q9NR96 1032 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 IFNKQ9P0W0 207 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 SIK3Q9Y2K2 1263 aa17.09■□□□□ 0.33
HMGA1-204ENST00000401473 BRWD1Q9NSI6 2320 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 HIDE1A8MVS5 230 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 HCRTO43612 131 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 HUS1O60921 280 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 OAZ2O95190 189 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 ODC1P11926 461 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 TNNC1P63316 161 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 SCARA5Q6ZMJ2 495 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 RRAGAQ7L523 313 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 TOP6BLQ8N6T0 577 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 RIN2Q8WYP3 895 aaPredicted RBP17.08■□□□□ 0.33
HMGA1-204ENST00000401473 ERGIC2Q96RQ1 377 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 RTP3Q9BQQ7 232 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 MRPL45Q9BRJ2 306 aaKnown RBP17.08■□□□□ 0.33
HMGA1-204ENST00000401473 HERC2P3Q9BVR0 1158 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 BCO2Q9BYV7 579 aa17.08■□□□□ 0.33
HMGA1-204ENST00000401473 A0A0C4DFX4 3053 aa17.08■□□□□ 0.32
HMGA1-204ENST00000401473 GABRDO14764 452 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 TBC1D4O60343 1298 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 CLSTN1O94985 981 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 CXCL14O95715 111 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 TYMPP19971 482 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 LMO2P25791 158 aa17.07■□□□□ 0.32
HMGA1-204ENST00000401473 YWHAHQ04917 246 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-204ENST00000401473 SYCP1Q15431 976 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms