RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 CCDC142Q17RM4 750 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CEP135Q66GS9 1140 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 RNF19BQ6ZMZ0 732 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CCDC149Q6ZUS6 474 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 GET4Q7L5D6 327 aaPredicted RBP8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 GRASPQ7Z6J2 395 aaPredicted RBP8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 WDR49Q8IV35 697 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 C12orf56Q8IXR9 622 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 TTC9BQ8N6N2 239 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CMASQ8NFW8 434 aaPredicted RBP8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZNF516Q92618 1163 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CCDC47Q96A33 483 aaKnown RBP8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 ANKRD36BP1Q96IX9 119 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 NECTIN4Q96NY8 510 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CGRRF1Q99675 332 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 RTP3Q9BQQ7 232 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 PRKD2Q9BZL6 878 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CRISPLD1Q9H336 500 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 SMOC2Q9H3U7 446 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 PLEKHA4Q9H4M7 779 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CYP4F11Q9HBI6 524 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 PCDHA5Q9Y5H7 936 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CLUHO75153 1309 aa8.27□□□□□ -1.09
HMGB3P1-201ENST00000393368 CUL9Q8IWT3 2517 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 LRRIQ3A6PVS8 624 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 BIN1O00499 593 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 PDXKO00764 312 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 NRG2O14511 850 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 PRRG1O14668 218 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ATMINO43313 823 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 CALUO43852 315 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 KINO60870 393 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ABLIM3O94929 683 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 OAZ2O95190 189 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 CST3P01034 146 aaPredicted RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 TNNC2P02585 160 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 TYMPP19971 482 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 NR2F2P24468 414 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ACAT1P24752 427 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 PRCPP42785 496 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SNRPFP62306 86 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 RBP5P82980 135 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ADCY1Q08828 1119 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 PSMD6Q15008 389 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 CAMK4Q16566 473 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SV2CQ496J9 727 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SLC39A12Q504Y0 691 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ELMSAN1Q6PJG2 1045 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 C15orf39Q6ZRI6 1047 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 TRAPPC11Q7Z392 1133 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 OSTM1Q86WC4 334 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 NT5DC4Q86YG4 428 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 PDCL2Q8N4E4 241 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 TDRD5Q8NAT2 981 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZNF461Q8TAF7 563 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 GOLGA5Q8TBA6 731 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 HDAC7Q8WUI4 952 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 CACTINQ8WUQ7 758 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SMARCE1Q969G3 411 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 MFSD14AQ96MC6 490 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZNF560Q96MR9 790 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 FNBP1Q96RU3 617 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 MYADMQ96S97 322 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 KIAA1586Q9HCI6 787 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 WDR6Q9NNW5 1121 aaKnown RBP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 DMAC2Q9NW81 257 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZDHHC7Q9NXF8 308 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 DPP7Q9UHL4 492 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 MAN1B1Q9UKM7 699 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 ITGA11Q9UKX5 1188 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 L1RE1Q9UN81 338 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SLC27A5Q9Y2P5 690 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 SNX9Q9Y5X1 595 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 TSC2P49815 1807 aa8.26□□□□□ -1.09
HMGB3P1-201ENST00000393368 MTMR11A4FU01 709 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 TRIM49BA6NDI0 452 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 DCXO43602 365 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 AKAP3O75969 853 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 CLSTN1O94985 981 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 SMC2O95347 1197 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 CYP11A1P05108 521 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 TRIM49P0CI25 452 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 TRIM49CP0CI26 452 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 ATF2P15336 505 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 GBP2P32456 591 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 ELF1P32519 619 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 PMS1P54277 932 aaKnown RBP8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 MYL6P60660 151 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 TWF1Q12792 350 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 DUSP4Q13115 394 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 BIRC3Q13489 604 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 SURF1Q15526 300 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 DUOXA2Q1HG44 320 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 SLC5A9Q2M3M2 681 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZCWPW2Q504Y3 356 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 C1orf220Q5T0J3 134 aa8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 ZNF658Q5TYW1 1059 aaPredicted RBP8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 TDRD10Q5VZ19 366 aaKnown RBP8.25□□□□□ -1.09
HMGB3P1-201ENST00000393368 LRRTM3Q86VH5 581 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms