RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ERICH1Q86X53 443 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 KIF2BQ8N4N8 673 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ENDOVQ8N8Q3 282 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ANKLE1Q8NAG6 615 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ATP6V0A1Q93050 837 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ALKBH8Q96BT7 664 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 GPRASP2Q96D09 838 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF570Q96NI8 536 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 FNBP1Q96RU3 617 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 HEMGNQ9BXL5 484 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 TLE6Q9H808 572 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 RNPEPL1Q9HAU8 725 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 PDLIM7Q9NR12 457 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 GINM1Q9NU53 330 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 FBXO28Q9NVF7 368 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 DNAJC17Q9NVM6 304 aaKnown RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ARHGAP28Q9P2N2 729 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 PSMC3IPQ9P2W1 217 aaPredicted RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 LNPEPQ9UIQ6 1025 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 CORO1CQ9ULV4 474 aaPredicted RBP10.57□□□□□ -0.72
COL17A1-203ENST00000393211 EFR3BQ9Y2G0 817 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 STK38LQ9Y2H1 464 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 LRRC42Q9Y546 428 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 ARID2Q68CP9 1835 aa10.57□□□□□ -0.72
COL17A1-203ENST00000393211 CNTNAP1P78357 1384 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 C2CD2LO14523 706 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 TLR3O15455 904 aaKnown RBP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 TYROBPO43914 113 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 LSM8O95777 96 aaKnown RBP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CCNE2O96020 404 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 LDHAP00338 332 aaKnown RBP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 PIGRP01833 764 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CALB1P05937 261 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 GNAZP19086 355 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 IBSPP21815 317 aaPredicted RBP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 RXRBP28702 533 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 PHBP35232 272 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 VPS41P49754 854 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 PSEN1P49768 467 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CUL2Q13617 745 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 BLMHQ13867 455 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 EFHC2Q5JST6 749 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ANKRD20A2Q5SQ80 823 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ANKRD20A1Q5TYW2 823 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ANKRD20A3Q5VUR7 823 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 FYB2Q5VWT5 728 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 SLFN12LQ6IEE8 588 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 C10orf82Q8WW14 230 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF516Q92618 1163 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 PRCCQ92733 491 aaPredicted RBP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ERP27Q96DN0 273 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 SLITRK1Q96PX8 696 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 FAM213AQ9BRX8 229 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 PCDH9Q9HC56 1237 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CYLDQ9NQC7 956 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CYP39A1Q9NYL5 469 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF148Q9UQR1 794 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 CHKBQ9Y259 395 aa10.56□□□□□ -0.72
COL17A1-203ENST00000393211 TMEM191CA6NGB0 347 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TM9SF1O15321 606 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 STBD1O95210 358 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 MMP10P09238 476 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TMEM191BP0C7N4 346 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 KRT15P19012 456 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PTPN4P29074 926 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 GNA15P30679 374 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 DSG3P32926 999 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PIK3CAP42336 1068 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 ARSEP51690 589 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 AP3M2P53677 418 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 VCPP55072 806 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 GEMIN4P57678 1058 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PIGHQ14442 188 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 LLGL1Q15334 1064 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 DLGAP5Q15398 846 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 OASLQ15646 514 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PKN2Q16513 984 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 RNASEH2BQ5TBB1 312 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 HHATQ5VTY9 493 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PLA2G4FQ68DD2 849 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 CYP4F22Q6NT55 531 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 FAM47EQ6ZV65 393 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 NLRX1Q86UT6 975 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 MTMR14Q8NCE2 650 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 STK32AQ8WU08 396 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 BSNDQ8WZ55 320 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 UTP4Q969X6 686 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 BICD1Q96G01 975 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 FAXDC2Q96IV6 333 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 CEP170P1Q96L14 293 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PWWP2AQ96N64 755 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TAAR1Q96RJ0 339 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PDCD2LQ9BRP1 358 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 C11orf70Q9BRQ4 267 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PI4K2AQ9BTU6 479 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF518BQ9C0D4 1074 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 MAF1Q9H063 256 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 SLC38A10Q9HBR0 1119 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PXMP2Q9NR77 195 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms