RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 GJC1P36383 396 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ALDH5A1P51649 535 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 STAT5BP51692 787 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 AP3M2P53677 418 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 KRT17Q04695 432 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SH3D19Q5HYK7 790 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 RNF187Q5TA31 235 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SPOPLQ6IQ16 392 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ZDHHC24Q6UX98 284 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SYDE1Q6ZW31 735 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CPNE8Q86YQ8 564 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 RIOX2Q8IUF8 465 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 PASD1Q8IV76 773 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 PIAS4Q8N2W9 510 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 C12orf50Q8NA57 414 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 RBBP8NLQ8NC74 664 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 B4GALNT2Q8NHY0 566 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 OPTNQ96CV9 577 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 TXLNGYQ9BZA5 131 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 TMEM134Q9H6X4 195 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 USTQ9Y2C2 406 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 STYXL1Q9Y6J8 313 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 GRIN3BO60391 1043 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 PIGRP01833 764 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 RARGP13631 454 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ARL2P36404 184 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 NOP14P78316 857 aaKnown RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SP2Q02086 613 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SLC29A2Q14542 456 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 USP50Q70EL3 339 aaPredicted RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ZNF365Q70YC5 407 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ILDR2Q71H61 639 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CPLX4Q7Z7G2 160 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ZBTB8OSQ8IWT0 167 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 RHOT1Q8IXI2 618 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ABRAQ8N0Z2 381 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 UHMK1Q8TAS1 419 aaKnown RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 FAM167AQ96KS9 214 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SCLT1Q96NL6 688 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 NIFKQ9BYG3 293 aaKnown RBP10.23□□□□□ -0.77
COL6A3-204ENST00000392003 PROSCO94903 275 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 ATG7O95352 703 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CLTAP09496 248 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SETSIPP0DME0 302 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 IMPDH2P12268 514 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 MARK3P27448 753 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 TMOD1P28289 359 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 EFNA5P52803 228 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CLDN10P78369 228 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CENPCQ03188 943 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 LAMB3Q13751 1172 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 NCOA4Q13772 614 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SPATA21Q7Z572 469 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 SEPT1Q8WYJ6 367 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 VCPIP1Q96JH7 1222 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 MMP19Q99542 508 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 CCDC113Q9H0I3 377 aa10.23□□□□□ -0.77
COL6A3-204ENST00000392003 A0A0B4J269 797 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 IQCA1LA6NCM1 817 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 RASGRF2O14827 1237 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ATP6V1G1O75348 118 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SLC25A27O95847 323 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ATF2P15336 505 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 YBX3P16989 372 aaKnown RBP eCLIP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ITIH2P19823 946 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 TRPC3Q13507 836 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ART4Q93070 314 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 MRPL4Q9BYD3 311 aaKnown RBP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SEMA4AQ9H3S1 761 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 WHRNQ9P202 907 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SMAPO00193 183 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ADCY3O60266 1144 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 AGTP01019 485 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 CYP1A1P04798 512 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ATP4AP20648 1035 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 UBA1P22314 1058 aaKnown RBP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 CDC25CP30307 473 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 ADCY8P40145 1251 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 CAV1Q03135 178 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SURF1Q15526 300 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 TRMT10CQ7L0Y3 403 aaKnown RBP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 TAOK1Q7L7X3 1001 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 TCP11Q8WWU5 503 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 PGM2Q96G03 612 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SNF8Q96H20 258 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 SLC12A6Q9UHW9 1150 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 IVNS1ABPQ9Y6Y0 642 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 MROH7Q68CQ1 1323 aa10.22□□□□□ -0.77
COL6A3-204ENST00000392003 COL11A1P12107 1806 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-204ENST00000392003 TLR3O15455 904 aaKnown RBP10.21□□□□□ -0.77
COL6A3-204ENST00000392003 MEFVO15553 781 aaPredicted RBP10.21□□□□□ -0.77
COL6A3-204ENST00000392003 PSTPIP1O43586 416 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 LGR5O75473 907 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 VNN1O95497 513 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 SHBGP04278 402 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 RPSAP08865 295 aaKnown RBP10.21□□□□□ -0.77
COL6A3-204ENST00000392003 FGFR4P22455 802 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 C2CD6Q53TS8 623 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 ZPBP2Q6X784 338 aa10.21□□□□□ -0.77
COL6A3-204ENST00000392003 ZBTB33Q86T24 672 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms