RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CCT8P50990 548 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 INTS6LQ5JSJ4 861 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SYCP2LQ5T4T6 812 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PLEKHA7Q6IQ23 1121 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PMF1Q6P1K2 205 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SLAIN1Q8ND83 568 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SLC7A3Q8WY07 619 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CEP95Q96GE4 821 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CATSPER2Q96P56 530 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 TRNT1Q96Q11 434 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SEPT5Q99719 369 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SPAG7O75391 227 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 OR6B1O95007 311 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 FAM58BPP0C7Q3 252 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PCNAP12004 261 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 MAPK4P31152 587 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ALDH1A3P47895 512 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 IREB2P48200 963 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 C10orf76Q5T2E6 689 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 C2CD5Q86YS7 1000 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 MYOCDQ8IZQ8 938 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF512Q96ME7 567 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 LLPHQ9BRT6 129 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 RIOK2Q9BVS4 552 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PUS7LQ9H0K6 701 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SLITRK2Q9H156 845 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CHMP1AQ9HD42 196 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 HPS5Q9UPZ3 1129 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 WDR17Q8IZU2 1322 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 LOC102724159A0A0B4J2E5 919 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SLC28A2O43868 658 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 RAD23AP54725 363 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 EXOSC10Q01780 885 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF844Q08AG5 666 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SLC29A2Q14542 456 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PWP2Q15269 919 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 E2F5Q15329 346 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 TRIP13Q15645 432 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 C8orf34Q49A92 452 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 TTC38Q5R3I4 469 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 C1orf189Q5VU69 101 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 BEND5Q7L4P6 421 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 EPM2AIP1Q7L775 607 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 DGLUCYQ7Z3D6 616 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 GPBP1Q86WP2 473 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF594Q96JF6 807 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PACSIN1Q9BY11 444 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 REV1Q9UBZ9 1251 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PHF11Q9UIL8 331 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 AP4E1Q9UPM8 1137 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 LRRC9Q6ZRR7 1453 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 MYO1FO00160 1098 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 STAU1O95793 577 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 FESP07332 822 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 POLR2MP0CAP2 368 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 VARSP26640 1264 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 DNAJA1P31689 397 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZAP70P43403 619 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SCNN1DP51172 638 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 RIDAP52758 137 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CYP4A11Q02928 519 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 USF2Q15853 346 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 DOK7Q18PE1 504 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 LRRC36Q1X8D7 754 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ATG9AQ7Z3C6 839 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 AMIGO1Q86WK6 493 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 FAM20CQ8IXL6 584 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SPICE1Q8N0Z3 855 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 OR7D4Q8NG98 312 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 SUN3Q8TAQ9 357 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CSGALNACT1Q8TDX6 532 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 TGFBRAP1Q8WUH2 860 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 LARP4BQ92615 738 aaKnown RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF274Q96GC6 653 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CLMNQ96JQ2 1002 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 ZYG11BQ9C0D3 744 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CYP4F11Q9HBI6 524 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 PCDHB7Q9Y5E2 793 aa4.84□□□□□ -1.63
SCN1A-202ENST00000375405 CLRN2A0PK11 232 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 EPHB4P54760 987 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 CDKL1Q00532 357 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 OTUD4Q01804 1114 aaKnown RBP4.84□□□□□ -1.64
SCN1A-202ENST00000375405 SUPT20HL1Q3ZLR7 823 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF772Q68DY9 489 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-202ENST00000375405 PTRHD1Q6GMV3 140 aaKnown RBP4.84□□□□□ -1.64
SCN1A-202ENST00000375405 OGFOD2Q6N063 350 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 HIBCHQ6NVY1 386 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-202ENST00000375405 BHLHB9Q6PI77 547 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 KCTD8Q6ZWB6 473 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 FSTL5Q8N475 847 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-202ENST00000375405 OR7G1Q8NGA0 311 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 SCFD2Q8WU76 684 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 CDADC1Q9BWV3 514 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 TIMMDC1Q9NPL8 285 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 CREBZFQ9NS37 354 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 ACTR10Q9NZ32 417 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 NARFQ9UHQ1 456 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 SNX9Q9Y5X1 595 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 CFTRP13569 1480 aa4.84□□□□□ -1.64
SCN1A-202ENST00000375405 RRN3P2A6NIE6 340 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms