RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 FAM109BQ6ICB4 259 aaPredicted RBP15.26■□□□□ 0.03
HMGA1-203ENST00000374116 INTS8Q75QN2 995 aaKnown RBP15.26■□□□□ 0.03
HMGA1-203ENST00000374116 ZBTB33Q86T24 672 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 INTS2Q9H0H0 1204 aaKnown RBP15.26■□□□□ 0.03
HMGA1-203ENST00000374116 TMEM134Q9H6X4 195 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 RNF19AQ9NV58 838 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 HSPBP1Q9NZL4 362 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 ANKFY1Q9P2R3 1169 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 DNAJC12Q9UKB3 198 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 PTPRSQ13332 1948 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 CDH23Q9H251 3354 aa15.26■□□□□ 0.03
HMGA1-203ENST00000374116 A0A0A6YYK5 440 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-203ENST00000374116 CCDC189A1A4V9 331 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 GRXCR1A8MXD5 290 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 ANKRD63C9JTQ0 380 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 F8VZ95 297 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 P4HA2O15460 535 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 PHACTR2O75167 634 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 LIG3P49916 1009 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 DSC3Q14574 896 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 GJB7Q6PEY0 223 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 PSRC1Q6PGN9 363 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-203ENST00000374116 YTHDF3Q7Z739 585 aaKnown RBP15.25■□□□□ 0.03
HMGA1-203ENST00000374116 XXYLT1Q8NBI6 393 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 OLIG1Q8TAK6 271 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 LPPQ93052 612 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 RNPC3Q96LT9 517 aaKnown RBP15.25■□□□□ 0.03
HMGA1-203ENST00000374116 PSMB7Q99436 277 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 LRRC1Q9BTT6 524 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 APOL6Q9BWW8 343 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 PDZD7Q9H5P4 517 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 APEX2Q9UBZ4 518 aa15.25■□□□□ 0.03
HMGA1-203ENST00000374116 NPTXRO95502 500 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 FTCDO95954 541 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 PFKMP08237 780 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 H2AFZP0C0S5 128 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TRIM49P0CI25 452 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TRIM49CP0CI26 452 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 CCT5P48643 541 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 CETN1Q12798 172 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 DRAP1Q14919 205 aaPredicted RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 UBXN11Q5T124 520 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 ATF7IP2Q5U623 682 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 SLC39A4Q6P5W5 647 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 H2AFVQ71UI9 128 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 APBB2Q92870 758 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 FBXL18Q96ME1 805 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 ACO2Q99798 780 aaKnown RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 SH3GL2Q99962 352 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 GPR88Q9GZN0 384 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 HAPLN2Q9GZV7 340 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TSPYL2Q9H2G4 693 aaPredicted RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 COLQQ9Y215 455 aaPredicted RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 CNTNAP2Q9UHC6 1331 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 A0A1B0GUA9 196 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 DDX3XO00571 662 aaKnown RBP eCLIP15.24■□□□□ 0.032e-15■■□□□ 14.1
HMGA1-203ENST00000374116 HNRNPDLO14979 420 aaKnown RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 MATR3P43243 847 aaKnown RBP eCLIP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 GATMP50440 423 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 VAMP7P51809 220 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 OSTNP61366 133 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 DLG4P78352 724 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 SKOR1P84550 965 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 FAM187BQ17R55 369 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 NOTUMQ6P988 496 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 B4GALNT4Q76KP1 1039 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 ZSWIM2Q8NEG5 633 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 SLC30A5Q8TAD4 765 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 PLEKHO2Q8TD55 490 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 HERVK_113Q902F9 699 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TAF4BQ92750 862 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 SYT11Q9BT88 431 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TCHPQ9BT92 498 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 MRPL4Q9BYD3 311 aaKnown RBP15.24■□□□□ 0.03
HMGA1-203ENST00000374116 RNF39Q9H2S5 420 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 PCIF1Q9H4Z3 704 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 RGS18Q9NS28 235 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 EXOC7Q9UPT5 735 aa15.24■□□□□ 0.03
HMGA1-203ENST00000374116 TULP1O00294 542 aaPredicted RBP15.23■□□□□ 0.03
HMGA1-203ENST00000374116 TNFRSF8P28908 595 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 LIG4P49917 911 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 RABGGTBP53611 331 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 PPP3CAQ08209 521 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 RPS6KA1Q15418 735 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 TMEM192Q8IY95 271 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 LRRC57Q8N9N7 239 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 RDH13Q8NBN7 331 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 FTHL17Q9BXU8 183 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 CXCL16Q9H2A7 254 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 NXF3Q9H4D5 531 aaKnown RBP15.23■□□□□ 0.03
HMGA1-203ENST00000374116 PLEKHA4Q9H4M7 779 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 RBM12Q9NTZ6 932 aaKnown RBP15.23■□□□□ 0.03
HMGA1-203ENST00000374116 FAM105AQ9NUU6 356 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 BCCIPQ9P287 314 aaKnown RBP eCLIP15.23■□□□□ 0.03
HMGA1-203ENST00000374116 MCM8Q9UJA3 840 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 SZT2Q5T011 3432 aa15.23■□□□□ 0.03
HMGA1-203ENST00000374116 TTC3P53804 2025 aa15.22■□□□□ 0.03
HMGA1-203ENST00000374116 ABHD14A-ACY1A0A1B0GW23 586 aa15.22■□□□□ 0.03
HMGA1-203ENST00000374116 C9IYK1 514 aa15.22■□□□□ 0.03
HMGA1-203ENST00000374116 GOLGA8KD6RF30 607 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms