RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PPIL2Q13356 520 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DHX34Q14147 1143 aaKnown RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 NIPA1Q7RTP0 329 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ZNF720Q7Z2F6 126 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TMC2Q8TDI7 906 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DCUN1D1Q96GG9 259 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TMEM117Q9H0C3 514 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 GTF3C4Q9UKN8 822 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 A0A087WZ62 844 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 FAM86B1E9PN63 330 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 H0Y626 953 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 FAM86B2P0C5J1 330 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CUL2Q13617 745 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TMEM132BQ14DG7 1078 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TRIM65Q6PJ69 517 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ZBED8Q8IZ13 594 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 SYN2Q92777 582 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 PGLYRP2Q96PD5 576 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 FDXACB1Q9BRP7 624 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CYP4F11Q9HBI6 524 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DPP3Q9NY33 737 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 MRPL42Q9Y6G3 142 aaKnown RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 SLURP2P0DP57 97 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ALDH5A1P51649 535 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 EIF3EP60228 445 aaKnown RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DEUP1Q05D60 604 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DBN1Q16643 649 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TDRD10Q5VZ19 366 aaKnown RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 SPATA4Q8NEY3 305 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 PRPF4O43172 522 aaKnown RBP eCLIP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 NCAM1P13591 858 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ELNP15502 786 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 EFHC1Q5JVL4 640 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 SNF8Q96H20 258 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CLMNQ96JQ2 1002 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 VPS11Q9H270 941 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 HOXA2O43364 376 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CDH18Q13634 790 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 PIGHQ14442 188 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MAPRE1Q15691 268 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 E4F1Q66K89 784 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MTG1Q9BT17 334 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 OLFML3Q9NRN5 406 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MAP10Q9P2G4 905 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CYTH3O43739 400 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 KPNA1P52294 538 aaPredicted RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 ATG16L1Q676U5 607 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 SLC13A4Q9UKG4 626 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 PMS2P54278 862 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 LBRQ14739 615 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 LLGL2Q6P1M3 1020 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CIPCQ9C0C6 399 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MSRAQ9UJ68 235 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CAPN7Q9Y6W3 813 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 RASA4BC9J798 803 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 RASA4O43374 803 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 RARRES1P49788 294 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 ARHGEF7Q14155 803 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MYBPC2Q14324 1141 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 FSCN1Q16658 493 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 PRR23CQ6ZRP0 262 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 RAPGEF5Q92565 580 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 ULK4Q96C45 1275 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CGRRF1Q99675 332 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 NMRK2Q9NPI5 230 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 AMACRQ9UHK6 382 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 ALDH2P05091 517 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 AKAP5P24588 427 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CSE1LP55060 971 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 VCPP55072 806 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 SCFD1Q8WVM8 642 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 COG4Q9H9E3 785 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 PLAGL2Q9UPG8 496 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 FER1L4A9Z1Z3 1794 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 FAM200BP0CF97 657 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 ACO1P21399 889 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 BRD2P25440 801 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 CASP4P49662 377 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 KCNA1Q09470 495 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 TTI2Q6NXR4 508 aa12.17□□□□□ -0.46
SYNE1-204ENST00000367248 MRPS31Q92665 395 aaKnown RBP12.17□□□□□ -0.46
SYNE1-204ENST00000367248 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 CD44P16070 742 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 PSMC6P62333 389 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 GTF2H3Q13889 308 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 GOLGA7BQ2TAP0 167 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 GJB7Q6PEY0 223 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 C1orf131Q8NDD1 294 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 TTC17Q96AE7 1141 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 TRPV6Q9H1D0 765 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 PPLO60437 1756 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 HSPA4LO95757 839 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 ODC1P11926 461 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 AVPR1AP37288 418 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 ARSEP51690 589 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 ACVR2BQ13705 512 aa12.16□□□□□ -0.46
SYNE1-204ENST00000367248 EARS2Q5JPH6 523 aaKnown RBP12.16□□□□□ -0.46
SYNE1-204ENST00000367248 CENPPQ6IPU0 288 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms