RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TOM1L1O75674 476 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 RPP40O75818 363 aaKnown RBP15.09■□□□□ 0.01
VPS29-201ENST00000360579 AKAP3O75969 853 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 EPN2O95208 641 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 HARSP12081 509 aaKnown RBP15.09■□□□□ 0.01
VPS29-201ENST00000360579 WEE1P30291 646 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 FOSBP53539 338 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 STRN3Q13033 797 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 DUSP4Q13115 394 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 GPR17Q13304 367 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 NOLC1Q14978 699 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS29-201ENST00000360579 PON2Q15165 354 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 ME3Q16798 604 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 N4BP2L1Q5TBK1 243 aaPredicted RBP15.09■□□□□ 0.01
VPS29-201ENST00000360579 ITIH5Q86UX2 942 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 PGLYRP2Q96PD5 576 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 RAB34Q9BZG1 259 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 ARRDC1-AS1Q9H2J1 176 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 ATXN3LQ9H3M9 355 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 PLEKHA5Q9HAU0 1116 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 THG1LQ9NWX6 298 aaKnown RBP15.09■□□□□ 0.01
VPS29-201ENST00000360579 GTSE1Q9NYZ3 720 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 LRWD1Q9UFC0 647 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 DNM3Q9UQ16 869 aa15.09■□□□□ 0.01
VPS29-201ENST00000360579 TM4SF5O14894 197 aa15.08■□□□□ 0
VPS29-201ENST00000360579 ATG13O75143 517 aa15.08■□□□□ 0
VPS29-201ENST00000360579 LRPAP1P30533 357 aa15.08■□□□□ 0
VPS29-201ENST00000360579 RAP1GAPP47736 663 aa15.08■□□□□ 0
VPS29-201ENST00000360579 MYBPC2Q14324 1141 aa15.08■□□□□ 0
VPS29-201ENST00000360579 PDIA5Q14554 519 aa15.08■□□□□ 0
VPS29-201ENST00000360579 SF3A2Q15428 464 aaKnown RBP15.08■□□□□ 0
VPS29-201ENST00000360579 ZNF174Q15697 407 aa15.08■□□□□ 0
VPS29-201ENST00000360579 ECM1Q16610 540 aa15.08■□□□□ 0
VPS29-201ENST00000360579 SLC10A6Q3KNW5 377 aa15.08■□□□□ 0
VPS29-201ENST00000360579 WDR44Q5JSH3 913 aa15.08■□□□□ 0
VPS29-201ENST00000360579 STPG1Q5TH74 334 aa15.08■□□□□ 0
VPS29-201ENST00000360579 TAS1R3Q7RTX0 852 aa15.08■□□□□ 0
VPS29-201ENST00000360579 PSMG2Q969U7 264 aa15.08■□□□□ 0
VPS29-201ENST00000360579 TIPINQ9BVW5 301 aa15.08■□□□□ 0
VPS29-201ENST00000360579 DNAJC25Q9H1X3 360 aa15.08■□□□□ 0
VPS29-201ENST00000360579 DDX19AQ9NUU7 478 aaKnown RBP15.08■□□□□ 0
VPS29-201ENST00000360579 HSFX1Q9UBD0 423 aa15.08■□□□□ 0
VPS29-201ENST00000360579 ZMYM5Q9UJ78 669 aa15.08■□□□□ 0
VPS29-201ENST00000360579 XPOTO43592 962 aaKnown RBP15.07■□□□□ 0
VPS29-201ENST00000360579 JAK2O60674 1132 aa15.07■□□□□ 0
VPS29-201ENST00000360579 HIP1RO75146 1068 aa15.07■□□□□ 0
VPS29-201ENST00000360579 VNN2O95498 520 aa15.07■□□□□ 0
VPS29-201ENST00000360579 CCDC192P0DO97 292 aa15.07■□□□□ 0
VPS29-201ENST00000360579 CYP3A5P20815 502 aa15.07■□□□□ 0
VPS29-201ENST00000360579 TRAPPC10P48553 1259 aa15.07■□□□□ 0
VPS29-201ENST00000360579 AARSP49588 968 aaKnown RBP eCLIP15.07■□□□□ 0
VPS29-201ENST00000360579 ITPRIPL2Q3MIP1 535 aa15.07■□□□□ 0
VPS29-201ENST00000360579 STXBP5Q5T5C0 1151 aa15.07■□□□□ 0
VPS29-201ENST00000360579 GPR158Q5T848 1215 aa15.07■□□□□ 0
VPS29-201ENST00000360579 CENPPQ6IPU0 288 aa15.07■□□□□ 0
VPS29-201ENST00000360579 ARMCX5Q6P1M9 558 aa15.07■□□□□ 0
VPS29-201ENST00000360579 ZPBP2Q6X784 338 aa15.07■□□□□ 0
VPS29-201ENST00000360579 DNAJB7Q7Z6W7 309 aaPredicted RBP15.07■□□□□ 0
VPS29-201ENST00000360579 DAW1Q8N136 415 aa15.07■□□□□ 0
VPS29-201ENST00000360579 TTC8Q8TAM2 541 aa15.07■□□□□ 0
VPS29-201ENST00000360579 BPIFB1Q8TDL5 484 aa15.07■□□□□ 0
VPS29-201ENST00000360579 SNX29Q8TEQ0 813 aa15.07■□□□□ 0
VPS29-201ENST00000360579 ZFYVE19Q96K21 471 aa15.07■□□□□ 0
VPS29-201ENST00000360579 TMEM209Q96SK2 561 aa15.07■□□□□ 0
VPS29-201ENST00000360579 NTPCRQ9BSD7 190 aaKnown RBP15.07■□□□□ 0
VPS29-201ENST00000360579 MKNK1Q9BUB5 465 aa15.07■□□□□ 0
VPS29-201ENST00000360579 FOXP1Q9H334 677 aaPredicted RBP15.07■□□□□ 0
VPS29-201ENST00000360579 C2orf42Q9NWW7 574 aa15.07■□□□□ 0
VPS29-201ENST00000360579 ANKFY1Q9P2R3 1169 aa15.07■□□□□ 0
VPS29-201ENST00000360579 TUBGCP4Q9UGJ1 667 aa15.07■□□□□ 0
VPS29-201ENST00000360579 UBQLN1Q9UMX0 589 aaKnown RBP15.07■□□□□ 0
VPS29-201ENST00000360579 SLC8A2Q9UPR5 921 aa15.07■□□□□ 0
VPS29-201ENST00000360579 TRIP11Q15643 1979 aa15.07■□□□□ 0
VPS29-201ENST00000360579 CLDN3O15551 220 aa15.06■□□□□ 0
VPS29-201ENST00000360579 MEFVO15553 781 aaPredicted RBP15.06■□□□□ 0
VPS29-201ENST00000360579 OR4Q2P0C623 313 aa15.06■□□□□ 0
VPS29-201ENST00000360579 TYMPP19971 482 aa15.06■□□□□ 0
VPS29-201ENST00000360579 PAX3P23760 479 aa15.06■□□□□ 0
VPS29-201ENST00000360579 GABRR2P28476 465 aa15.06■□□□□ 0
VPS29-201ENST00000360579 CDC25CP30307 473 aa15.06■□□□□ 0
VPS29-201ENST00000360579 MCM2P49736 904 aa15.06■□□□□ 0
VPS29-201ENST00000360579 SMTNP53814 917 aa15.06■□□□□ 0
VPS29-201ENST00000360579 AMPD2Q01433 879 aa15.06■□□□□ 0
VPS29-201ENST00000360579 GRSF1Q12849 480 aaKnown RBP eCLIP15.06■□□□□ 0
VPS29-201ENST00000360579 PLA2G2CQ5R387 149 aa15.06■□□□□ 0
VPS29-201ENST00000360579 TTC38Q5R3I4 469 aa15.06■□□□□ 0
VPS29-201ENST00000360579 OVOS1Q6IE37 1185 aa15.06■□□□□ 0
VPS29-201ENST00000360579 DSTYKQ6XUX3 929 aa15.06■□□□□ 0
VPS29-201ENST00000360579 GAREM2Q75VX8 874 aa15.06■□□□□ 0
VPS29-201ENST00000360579 SPIRE2Q8WWL2 714 aa15.06■□□□□ 0
VPS29-201ENST00000360579 LRRC3BQ96PB8 259 aa15.06■□□□□ 0
VPS29-201ENST00000360579 GCNAQ96QF7 691 aa15.06■□□□□ 0
VPS29-201ENST00000360579 TSPAN18Q96SJ8 248 aa15.06■□□□□ 0
VPS29-201ENST00000360579 LSM14BQ9BX40 385 aaKnown RBP15.06■□□□□ 0
VPS29-201ENST00000360579 CRISPLD1Q9H336 500 aa15.06■□□□□ 0
VPS29-201ENST00000360579 TASP1Q9H6P5 420 aa15.06■□□□□ 0
VPS29-201ENST00000360579 VPS45Q9NRW7 570 aa15.06■□□□□ 0
VPS29-201ENST00000360579 TIMM13Q9Y5L4 95 aaPredicted RBP15.06■□□□□ 0
VPS29-201ENST00000360579 RALGAPA1Q6GYQ0 2036 aa15.05■□□□□ 0
VPS29-201ENST00000360579 FAM208BQ5VWN6 2430 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms