RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 UPP2O95045 317 aa21.27■■□□□ 1
CLN3-205ENST00000359984 CALCAP01258 141 aa21.27■■□□□ 1
CLN3-205ENST00000359984 KIF11P52732 1056 aa21.27■■□□□ 1
CLN3-205ENST00000359984 ZNF132P52740 706 aa21.27■■□□□ 1
CLN3-205ENST00000359984 C16orf59Q7L2K0 433 aa21.27■■□□□ 1
CLN3-205ENST00000359984 NOP9Q86U38 636 aaKnown RBP21.27■■□□□ 1
CLN3-205ENST00000359984 C17orf53Q8N3J3 647 aaPredicted RBP21.27■■□□□ 1
CLN3-205ENST00000359984 C3orf58Q8NDZ4 430 aa21.27■■□□□ 1
CLN3-205ENST00000359984 EPS8L1Q8TE68 723 aa21.27■■□□□ 1
CLN3-205ENST00000359984 UROC1Q96N76 676 aa21.27■■□□□ 1
CLN3-205ENST00000359984 SPTLC3Q9NUV7 552 aa21.27■■□□□ 1
CLN3-205ENST00000359984 AKR1B10O60218 316 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 CYP11B1P15538 503 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 RNASELQ05823 741 aaKnown RBP21.26■□□□□ 0.99
CLN3-205ENST00000359984 SMYD5Q6GMV2 418 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 COLGALT2Q8IYK4 626 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 SLC20A1Q8WUM9 679 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 HTATIP2Q9BUP3 242 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 NOCTQ9UK39 431 aaKnown RBP21.26■□□□□ 0.99
CLN3-205ENST00000359984 ADGRG1Q9Y653 693 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 TDRD15B5MCY1 1934 aaKnown RBP21.26■□□□□ 0.99
CLN3-205ENST00000359984 EIF3CLB5ME19 914 aaKnown RBP21.26■□□□□ 0.99
CLN3-205ENST00000359984 EFCAB14O75071 495 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 PPIGQ13427 754 aaKnown RBP eCLIP21.26■□□□□ 0.996e-7■■□□□ 11.8
CLN3-205ENST00000359984 SOWAHAQ2M3V2 549 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 CD300LGQ6UXG3 332 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 LIMS2Q7Z4I7 341 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 ACRBPQ8NEB7 543 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 WHAMMQ8TF30 809 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 TOP1MTQ969P6 601 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 EIF3CQ99613 913 aaKnown RBP21.26■□□□□ 0.99
CLN3-205ENST00000359984 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.26■□□□□ 0.99
CLN3-205ENST00000359984 ADAMTS1Q9UHI8 967 aa21.26■□□□□ 0.99
CLN3-205ENST00000359984 TBKBP1A7MCY6 615 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 ZNF263O14978 683 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 CILPO75339 1184 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 BPIFB4P59827 614 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 WDR5P61964 334 aaKnown RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 DEFB103AP81534 67 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 FPGSQ05932 587 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 GFPT1Q06210 699 aaPredicted RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 INCA1Q0VD86 236 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 ZNF394Q53GI3 561 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 FAM193BQ96PV7 902 aaPredicted RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 AGPAT1Q99943 283 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 MRPL45Q9BRJ2 306 aaKnown RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 FAM124BQ9H5Z6 455 aaPredicted RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 REXO2Q9Y3B8 237 aaKnown RBP21.25■□□□□ 0.99
CLN3-205ENST00000359984 LTBP2Q14767 1821 aa21.25■□□□□ 0.99
CLN3-205ENST00000359984 A0A087X0T9 212 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 CYB561D2O14569 222 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 B3GAT3O94766 335 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 LCA5LO95447 670 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 AMHP03971 560 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 FAM228BP0C875 321 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 SYN1P17600 705 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 CHRNB2P17787 502 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 ANXA13P27216 316 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 PDE6CP51160 858 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 CYP27A1Q02318 531 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 TAF3Q5VWG9 929 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 DCLRE1AQ6PJP8 1040 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 OTOP2Q7RTS6 562 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 LNX1Q8TBB1 728 aaPredicted RBP21.24■□□□□ 0.99
CLN3-205ENST00000359984 DDX1Q92499 740 aaKnown RBP21.24■□□□□ 0.99
CLN3-205ENST00000359984 NRDE2Q9H7Z3 1164 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 DNAJB4Q9UDY4 337 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 HMGXB4Q9UGU5 601 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 DDX3XO00571 662 aaKnown RBP eCLIP21.24■□□□□ 0.993e-8■■■□□ 15.1
CLN3-205ENST00000359984 DGKIO75912 1065 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 BAIAP3O94812 1187 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 RAD23BP54727 409 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 BMS1Q14692 1282 aaKnown RBP21.24■□□□□ 0.99
CLN3-205ENST00000359984 SLC18A3Q16572 532 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 PAN2Q504Q3 1202 aaKnown RBP21.24■□□□□ 0.99
CLN3-205ENST00000359984 ZNF365Q70YC5 407 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 GLYCTKQ8IVS8 523 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 SLC30A5Q8TAD4 765 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 RSPH1Q8WYR4 309 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 SENP8Q96LD8 212 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 TWNKQ96RR1 684 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 ELOVL4Q9GZR5 314 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 BARX2Q9UMQ3 279 aaPredicted RBP21.24■□□□□ 0.99
CLN3-205ENST00000359984 L1RE1Q9UN81 338 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 PPP2R2CQ9Y2T4 447 aa21.24■□□□□ 0.99
CLN3-205ENST00000359984 CCDC85CA6NKD9 419 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 F8W810 466 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TACC1O75410 805 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TNFAIP3P21580 790 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 AARSP49588 968 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-205ENST00000359984 NDST1P52848 882 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 EPHB4P54760 987 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TIGD5Q53EQ6 642 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TMCO2Q7Z6W1 182 aaPredicted RBP21.23■□□□□ 0.99
CLN3-205ENST00000359984 VPS36Q86VN1 386 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TTC39CQ8N584 583 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 TOP6BLQ8N6T0 577 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 APPL2Q8NEU8 664 aa21.23■□□□□ 0.99
CLN3-205ENST00000359984 MRPL9Q9BYD2 267 aaKnown RBP21.23■□□□□ 0.99
CLN3-205ENST00000359984 TRMT1Q9NXH9 659 aaKnown RBP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms