RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PATL1Q86TB9 770 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 GPRC5CQ9NQ84 441 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 FBXO2Q9UK22 296 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 PNMA8BQ9ULN7 279 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 RAG1P15918 1043 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 CAP2P40123 477 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 SBK1Q52WX2 424 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 OOSP2Q86WS3 158 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ERO1BQ86YB8 467 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 GGCXP38435 758 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 EXTL3O43909 919 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ALDH1A2O94788 518 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 URODP06132 367 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 MYL4P12829 197 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ACO1P21399 889 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF177Q13360 481 aaPredicted RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 WDCPQ9H6R7 721 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 LIMA1Q9UHB6 759 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 IGSF9BQ9UPX0 1349 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 ALDH18A1P54886 795 aaKnown RBP16.32■□□□□ 0.2
PTPRF-201ENST00000359947 NR1H3Q13133 447 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 EMBQ6PCB8 327 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 FBXO32Q969P5 355 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 MTBPQ96DY7 904 aa16.32■□□□□ 0.2
PTPRF-201ENST00000359947 CROCC2H7BZ55 1655 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF521Q96K83 1311 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 MAP3K6O95382 1288 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 MCF2P10911 925 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CALR3Q96L12 384 aaKnown RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 TMEM60Q9H2L4 133 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 TMEM39AQ9NV64 488 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 TRIM17Q9Y577 477 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF609O15014 1411 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ZNF185O15231 689 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 AP1G2O75843 785 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 VEGFAP15692 232 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 PNKPQ96T60 521 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 PYGBP11216 843 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ACADMP11310 421 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 STILQ15468 1287 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 SLC16A10Q8TF71 515 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 RPRD1AQ96P16 312 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 SPATA16Q9BXB7 569 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 STK33Q9BYT3 514 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 KIAA0391O15091 583 aaKnown RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 FBXO33Q7Z6M2 555 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 BRD8Q9H0E9 1235 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 EPB41L4AQ9HCS5 686 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 PDHXO00330 501 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 PMPCBO75439 489 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ATP1A1P05023 1023 aaKnown RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CYP2C19P33261 490 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 TASP1Q9H6P5 420 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CRLS1Q9UJA2 301 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 ARHGEF40Q8TER5 1519 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 BACE1P56817 501 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 BFSP2Q13515 415 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CACUL1Q86Y37 369 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CIPCQ9C0C6 399 aa16.31■□□□□ 0.2
PTPRF-201ENST00000359947 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-201ENST00000359947 TAL1P17542 331 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ATXN3P54252 364 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 NFIAQ12857 509 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 CTXN3Q4LDR2 81 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 SPATA18Q8TC71 538 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 VMP1Q96GC9 406 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 LRRC37BQ96QE4 947 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 GJB7Q6PEY0 223 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 MRPS31Q92665 395 aaKnown RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 M0QYT0 321 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 SLC16A3O15427 465 aaKnown RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 CAPZA2P47755 286 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ARFIP2P53365 341 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 FAM136AQ96C01 138 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 DDIT4Q9NX09 232 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 CDC42BPBQ9Y5S2 1711 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ICAM1P05362 532 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 BTKQ06187 659 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 MTF1Q14872 753 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 DDI1Q8WTU0 396 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 PFDN1O60925 122 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 POMCP01189 267 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 EPHB2P29323 1055 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 SLC11A2P49281 568 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 CUL3Q13618 768 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 BLOC1S5Q8TDH9 187 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 GLIS2Q9BZE0 524 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ZC3H7BQ9UGR2 993 aaKnown RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 H7C4K7 107 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 GYS1P13807 737 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ACADSBP45954 432 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 PIGHQ14442 188 aaPredicted RBP16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ACOT1Q86TX2 421 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 EPC1Q9H2F5 836 aa16.3■□□□□ 0.2
PTPRF-201ENST00000359947 ANKRD65E5RJM6 399 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 CYB561D2O14569 222 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 GPD1P21695 349 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 RAP1GAPP47736 663 aa16.29■□□□□ 0.2
PTPRF-201ENST00000359947 POLD3Q15054 466 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms