RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 PLK2Q9NYY3 685 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ATP10AO60312 1499 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 MYMKA6NI61 221 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 SMIM22K7EJ46 135 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 APOL1O14791 398 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 TP73O15350 636 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 BTG3Q14201 252 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 TMEM132DQ14C87 1099 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 PTPRN2Q92932 1015 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ZBTB45Q96K62 511 aaPredicted RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 MTMR12Q9C0I1 747 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 BPIFA1Q9NP55 256 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 IL1RAPL1Q9NZN1 696 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 LIMA1Q9UHB6 759 aaKnown RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 TARSL2A2RTX5 802 aaKnown RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ZNF197O14709 1029 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 GPC1P35052 558 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 CDH18Q13634 790 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 KRT72Q14CN4 511 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 HSP90AA5PQ58FG0 334 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 KIAA1324Q6UXG2 1013 aaKnown RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 FAM131BQ86XD5 332 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 PHACTR4Q8IZ21 702 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ATG4AQ8WYN0 398 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 SMARCAD1Q9H4L7 1026 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 VCX3AQ9NNX9 186 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ELNP15502 786 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 TSPAN8P19075 237 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 RABGGTBP53611 331 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 ZBTB10Q96DT7 871 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 LRRC1Q9BTT6 524 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CDV3Q9UKY7 258 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CYB561D2O14569 222 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 HTRA3P83110 453 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 C15orf59Q2T9L4 293 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 TRIM60Q495X7 471 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 RBBP8NLQ8NC74 664 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 DHX38Q92620 1227 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CYFIP2Q96F07 1278 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 VCPKMTQ9H867 229 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 PARVAQ9NVD7 372 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 TEKT2Q9UIF3 430 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FHOD1Q9Y613 1164 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 C5orf58C9J3I9 102 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 IFNA8P32881 189 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 PTF1AQ7RTS3 328 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 COL26A1Q96A83 441 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 PHF21BQ96EK2 531 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MED8Q96G25 268 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 SEL1LQ9UBV2 794 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 SHOC2Q9UQ13 582 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 WBP4O75554 376 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 AP1G2O75843 785 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MMEP08473 750 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 PDHBP11177 359 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CASP8Q14790 479 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 KRT39Q6A163 491 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 BTNL9Q6UXG8 535 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 RHOT1Q8IXI2 618 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 JMJD4Q9H9V9 463 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 EXOSC4Q9NPD3 245 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 SNX8Q9Y5X2 465 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 PDZK1P1A8MUH7 402 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MAPK10P53779 464 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MAN1C1Q9NR34 630 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 USE1Q9NZ43 259 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MYBL1P10243 752 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CTXN3Q4LDR2 81 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FAM171A1Q5VUB5 890 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 C1orf146Q5VVC0 180 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 GIMAP8Q8ND71 665 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 OR6K2Q8NGY2 324 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 ANKRD49Q8WVL7 239 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FBXO32Q969P5 355 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 AHCYL2Q96HN2 611 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 DPP3Q9NY33 737 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CACNG4Q9UBN1 327 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 DNAJC16Q9Y2G8 782 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 DCDC2CA8MYV0 355 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 GUCY2CP25092 1073 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 HSD17B4P51659 736 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 C3orf62Q6ZUJ4 267 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 SAPCD2Q86UD0 394 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FAM84AQ96KN4 292 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 STAP1Q9ULZ2 295 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FFAR2O15552 330 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 ZBED6P86452 979 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FMR1Q06787 632 aaKnown RBP eCLIP7.7□□□□□ -1.183e-6■■■■□ 26.4
VPS13A-202ENST00000357409 GALNTL6Q49A17 601 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 STRIP1Q5VSL9 837 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 BBOF1Q8ND07 529 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 SYTL5Q8TDW5 730 aaPredicted RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 LPPQ93052 612 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 MTIF3Q9H2K0 278 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 FGFR1OP2Q9NVK5 253 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 CHCHD3Q9NX63 227 aaKnown RBP7.7□□□□□ -1.18
VPS13A-202ENST00000357409 UGGT1Q9NYU2 1555 aa7.7□□□□□ -1.18
VPS13A-202ENST00000357409 EIF3CLB5ME19 914 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SUPT7LO94864 414 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms