RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TXKP42681 527 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 CREB5Q02930 508 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 TNK2Q07912 1038 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 PLA2G2CQ5R387 149 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 SH3PXD2AQ5TCZ1 1133 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 ATF7IP2Q5U623 682 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 DAB2IPQ5VWQ8 1189 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 KIAA1211LQ6NV74 962 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 PKN3Q6P5Z2 889 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 RNF19BQ6ZMZ0 732 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 APBB1IPQ7Z5R6 666 aaPredicted RBP12.25□□□□□ -0.45
RTN3-204ENST00000354497 SKAP1Q86WV1 359 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 SYNPOQ8N3V7 929 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 ZCCHC14Q8WYQ9 949 aaKnown RBP12.25□□□□□ -0.45
RTN3-204ENST00000354497 PGLYRP2Q96PD5 576 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 KIFC3Q9BVG8 833 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 AGXT2Q9BYV1 514 aa12.25□□□□□ -0.45
RTN3-204ENST00000354497 AFF4Q9UHB7 1163 aaKnown RBP12.25□□□□□ -0.45
RTN3-204ENST00000354497 GREB1Q4ZG55 1949 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 PDCD11Q14690 1871 aaKnown RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 FRYQ5TBA9 3013 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 FAM208BQ5VWN6 2430 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 TMEM8BA6NDV4 472 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 DTNBO60941 627 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 FCHO2Q0JRZ9 810 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 CCINQ13939 588 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 ELF2Q15723 593 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 ARHGAP29Q52LW3 1261 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 BMP2KLQ5H9B9 411 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 EARS2Q5JPH6 523 aaKnown RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 CREBRFQ8IUR6 639 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 ARID3BQ8IVW6 561 aaPredicted RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 HHIPQ96QV1 700 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 CCDC113Q9H0I3 377 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 ATXN3LQ9H3M9 355 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 TTC12Q9H892 705 aaPredicted RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 TOPORSQ9NS56 1045 aaPredicted RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 GJB4Q9NTQ9 266 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 SLC38A7Q9NVC3 462 aa12.24□□□□□ -0.45
RTN3-204ENST00000354497 POLR3BQ9NW08 1133 aaPredicted RBP12.24□□□□□ -0.45
RTN3-204ENST00000354497 SOBPA7XYQ1 873 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 TULP1O00294 542 aaPredicted RBP12.23□□□□□ -0.45
RTN3-204ENST00000354497 CAVIN2O95810 425 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 HARSP12081 509 aaKnown RBP12.23□□□□□ -0.45
RTN3-204ENST00000354497 MARCKSP29966 332 aaPredicted RBP12.23□□□□□ -0.45
RTN3-204ENST00000354497 HSPA4P34932 840 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 NAMPTP43490 491 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 EPHB3P54753 998 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 EPHA5P54756 1037 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 RING1Q06587 406 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 PLD1Q13393 1074 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 TOB2Q14106 344 aaPredicted RBP12.23□□□□□ -0.45
RTN3-204ENST00000354497 PLK5Q496M5 336 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 ARHGAP15Q53QZ3 475 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 GPR158Q5T848 1215 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 NT5DC1Q5TFE4 455 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 LRSAM1Q6UWE0 723 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 FAM177A1Q8N128 213 aaPredicted RBP12.23□□□□□ -0.45
RTN3-204ENST00000354497 FBXL16Q8N461 479 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 APPL2Q8NEU8 664 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 KCNB2Q92953 911 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 POLD4Q9HCU8 107 aa12.23□□□□□ -0.45
RTN3-204ENST00000354497 ARHGEF35A5YM69 484 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 DCLK1O15075 740 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 ATG13O75143 517 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 AKAP3O75969 853 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 RHOBTB1O94844 696 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 OR4Q2P0C623 313 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 GBP1P32455 592 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 GRSF1Q12849 480 aaKnown RBP eCLIP12.22□□□□□ -0.45
RTN3-204ENST00000354497 MRPL58Q14197 206 aaKnown RBP12.22□□□□□ -0.45
RTN3-204ENST00000354497 PPP2R5AQ15172 486 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 UAP1L1Q3KQV9 507 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 ITPRIPL2Q3MIP1 535 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 ZNF568Q3ZCX4 644 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 PADI6Q6TGC4 694 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 TMC8Q8IU68 726 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 DDX12PQ92771 950 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 C18orf25Q96B23 403 aaPredicted RBP12.22□□□□□ -0.45
RTN3-204ENST00000354497 IFT74Q96LB3 600 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 LRRC3BQ96PB8 259 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 TMEM209Q96SK2 561 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 SCNM1Q9BWG6 230 aa12.22□□□□□ -0.45
RTN3-204ENST00000354497 CCDC163A0A0D9SF12 145 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 NEMFO60524 1076 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 CDKL5O76039 1030 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 KRT2P35908 639 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 GRM5P41594 1212 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 ALDH1A3P47895 512 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 EVCP57679 992 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 NR5A1Q13285 461 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 PTPAQ15257 358 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 DNTTIP2Q5QJE6 756 aaKnown RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 BPIFB1Q8TDL5 484 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 ZC3H10Q96K80 434 aaKnown RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 SUSD3Q96L08 255 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 ZMAT2Q96NC0 199 aaKnown RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 TBC1D32Q96NH3 1257 aa12.21□□□□□ -0.45
RTN3-204ENST00000354497 SMG9Q9H0W8 520 aaKnown RBP12.21□□□□□ -0.45
RTN3-204ENST00000354497 DUSP15Q9H1R2 295 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms