RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 PTPRFP10586 1907 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 TMEM110-MUSTN1A8MSY1 372 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 FOXN3O00409 490 aaPredicted RBP16.81■□□□□ 0.28
HMGA1-202ENST00000347617 NVLO15381 856 aaKnown RBP16.81■□□□□ 0.28
HMGA1-202ENST00000347617 EXOC3O60645 756 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 ASMTLO95671 621 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 CCND2P30279 289 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 RPS6KA3P51812 740 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 BFSP1Q12934 665 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 MTMR1Q13613 665 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 PDK4Q16654 411 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 ARHGAP44Q17R89 818 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 SLC5A9Q2M3M2 681 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 SLC30A10Q6XR72 485 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.81■□□□□ 0.282e-6■■■■□ 19.9
HMGA1-202ENST00000347617 ARHGAP18Q8N392 663 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 RDM1Q8NG50 284 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 ATL2Q8NHH9 583 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 ZNF564Q8TBZ8 553 aaPredicted RBP16.81■□□□□ 0.28
HMGA1-202ENST00000347617 RNF217Q8TC41 542 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 CFAP57Q96MR6 1250 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 IWS1Q96ST2 819 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 UNC45AQ9H3U1 944 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 PARVGQ9HBI0 331 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 SSU72Q9NP77 194 aaKnown RBP16.81■□□□□ 0.28
HMGA1-202ENST00000347617 HOMER2Q9NSB8 354 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 PHTF1Q9UMS5 762 aa16.81■□□□□ 0.28
HMGA1-202ENST00000347617 COL11A1P12107 1806 aaPredicted RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 EDF1O60869 148 aaKnown RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 LYPLA2O95372 231 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 CREB1P16220 341 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 IVDP26440 423 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 FOXN2P32314 431 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 PTDSS1P48651 473 aaKnown RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 ITGA8P53708 1063 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 SH3BGRP55822 239 aaPredicted RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 PSMC6P62333 389 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 KYNUQ16719 465 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 THEMIS2Q5TEJ8 643 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 FYB2Q5VWT5 728 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 TMEM154Q6P9G4 183 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 NSMFQ6X4W1 530 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 NLRX1Q86UT6 975 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 SRRM1Q8IYB3 904 aaKnown RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 RPUSD2Q8IZ73 545 aaKnown RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 DNERQ8NFT8 737 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 IL31RAQ8NI17 732 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 PSPC1Q8WXF1 523 aaKnown RBP16.8■□□□□ 0.28
HMGA1-202ENST00000347617 ZNF333Q96JL9 665 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 CDHR1Q96JP9 859 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 LOC285556D6RIA3 1793 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 OTOFQ9HC10 1997 aa16.8■□□□□ 0.28
HMGA1-202ENST00000347617 RASA4BC9J798 803 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 C2CD2LO14523 706 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 TP73O15350 636 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RASA4O43374 803 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 GH1P01241 217 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 P4HBP07237 508 aaKnown RBP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 SP100P23497 879 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 ALCAMQ13740 583 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CBWD6Q4V339 395 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CBWD3Q5JTY5 395 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CBWD5Q5RIA9 395 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 LDLRAD1Q5T700 205 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RINT1Q6NUQ1 792 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 FASTKD5Q7L8L6 764 aaKnown RBP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RIOX2Q8IUF8 465 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CCDC89Q8N998 374 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 LMO3Q8TAP4 145 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 LRRC8CQ8TDW0 803 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 DENND1AQ8TEH3 1009 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 MAML1Q92585 1016 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 SLC7A6OSQ96CW6 309 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 DYDC2Q96IM9 177 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 FAM81BQ96LP2 452 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 SENP7Q9BQF6 1050 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RUSC1Q9BVN2 902 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 BHMT2Q9H2M3 363 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 AGPAT3Q9NRZ7 376 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RGL1Q9NZL6 768 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 WDR35Q9P2L0 1181 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 NR3C2P08235 984 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CDC25CP30307 473 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 SFNP31947 248 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 CHKAP35790 457 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 PTP4A2Q12974 167 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 GSTA3Q16772 222 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 PHLDB3Q6NSJ2 640 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 TRABD2AQ86V40 505 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 PALB2Q86YC2 1186 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 MYCT1Q8N699 235 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 C10orf82Q8WW14 230 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 FAM136AQ96C01 138 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 UIMC1Q96RL1 719 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 LARSQ9P2J5 1176 aaKnown RBP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 PDP2Q9P2J9 529 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 HAO1Q9UJM8 370 aa16.79■□□□□ 0.28
HMGA1-202ENST00000347617 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.79■□□□□ 0.28
HMGA1-202ENST00000347617 RSPH10B2B2RC85 870 aa16.78■□□□□ 0.28
HMGA1-202ENST00000347617 RSPH10BP0C881 870 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms