RNA–Protein interactions for RNA: ENST00000346501.8

TSPAN4-201, Transcript of tetraspanin 4, humanhuman

TSL 3 BASIC

Gene TSPAN4, Length 882 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-201ENST00000346501 PTPN21Q16825 1174 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 RSPO2Q6UXX9 243 aaPredicted RBP17■□□□□ 0.31
TSPAN4-201ENST00000346501 GRASPQ7Z6J2 395 aaPredicted RBP17■□□□□ 0.31
TSPAN4-201ENST00000346501 CBWD2Q8IUF1 395 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 WDR49Q8IV35 697 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 TCEAL8Q8IYN2 117 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 EDAQ92838 391 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 KHSRPQ92945 711 aaKnown RBP eCLIP17■□□□□ 0.31
TSPAN4-201ENST00000346501 ZNF707Q96C28 371 aaPredicted RBP17■□□□□ 0.31
TSPAN4-201ENST00000346501 INTS13Q9NVM9 706 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 LIMD1Q9UGP4 676 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 SORCS3Q9UPU3 1222 aa17■□□□□ 0.31
TSPAN4-201ENST00000346501 PDXKO00764 312 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 PPEF2O14830 753 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 RHOBTB3O94955 611 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 CLSTN1O94985 981 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 PAPLNO95428 1278 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 CYP11A1P05108 521 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 DLATP10515 647 aaKnown RBP16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 PTPN2P17706 415 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 HOXD13P35453 343 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 FAM160A1Q05DH4 1040 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 SMARCB1Q12824 385 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 DPYDQ12882 1025 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 KCNB1Q14721 858 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 PABPC1LQ4VXU2 614 aaKnown RBP16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 GET4Q7L5D6 327 aaPredicted RBP16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 UBALD2Q8IYN6 164 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 C1orf127Q8N9H9 656 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 NXPE3Q969Y0 559 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 ZNF512Q96ME7 567 aaPredicted RBP16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 MTMR12Q9C0I1 747 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 GOLPH3LQ9H4A5 285 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 IGSF9Q9P2J2 1179 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 FRMD4BQ9Y2L6 1034 aa16.99■□□□□ 0.31
TSPAN4-201ENST00000346501 ZNF197O14709 1029 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 PHACTR2O75167 634 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 RPL13P26373 211 aaKnown RBP16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 AP3M2P53677 418 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 ZXDAP98168 799 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 MYL7Q01449 175 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 TSPY1Q01534 308 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 CYP24A1Q07973 514 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 GPR17Q13304 367 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 TRPC3Q13507 836 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 PSMD6Q15008 389 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 CYP4A22Q5TCH4 519 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 DCP1BQ8IZD4 617 aaKnown RBP16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 TMEM86AQ8N2M4 240 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 KIAA0895Q8NCT3 520 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 ZSWIM2Q8NEG5 633 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 CCDC127Q96BQ5 260 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 CHMP5Q9NZZ3 219 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 INSL5Q9Y5Q6 135 aa16.98■□□□□ 0.31
TSPAN4-201ENST00000346501 XIRP2A4UGR9 3374 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 PRR33A8MZF0 331 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 SPTLC1O15269 473 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 KINO60870 393 aaKnown RBP16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 PRR29P0C7W0 189 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 ALDH1A3P47895 512 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 EPHB3P54753 998 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 SLC9A9Q8IVB4 645 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 FMR1NBQ8N0W7 255 aaPredicted RBP16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 LEMD2Q8NC56 503 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 SPATA18Q8TC71 538 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 CGRRF1Q99675 332 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 MRPS23Q9Y3D9 190 aaKnown RBP16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 SNX9Q9Y5X1 595 aa16.97■□□□□ 0.31
TSPAN4-201ENST00000346501 NR3C1P04150 777 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 TUFMP49411 452 aaKnown RBP16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 SIGLEC14Q08ET2 396 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 WSCD1Q658N2 575 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 CEP135Q66GS9 1140 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 LMBRD2Q68DH5 695 aaPredicted RBP16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 RNF19BQ6ZMZ0 732 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 TRIM67Q6ZTA4 783 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 DPH6Q7L8W6 267 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 TMEM130Q8N3G9 435 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 GUF1Q8N442 669 aaKnown RBP16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 C2orf15Q8WU43 125 aaKnown RBP16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 SMARCE1Q969G3 411 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 HPDLQ96IR7 371 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 TIGD1Q96MW7 591 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 PGLYRP2Q96PD5 576 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 GSDMAQ96QA5 445 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 EPS15L1Q9UBC2 864 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 HSFX1Q9UBD0 423 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 CDH7Q9ULB5 785 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 ANK1P16157 1881 aa16.96■□□□□ 0.31
TSPAN4-201ENST00000346501 FAM86C2PA6NEL3 165 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 LAMP2P13473 410 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 PCSK1P29120 753 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 LHX1P48742 406 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 WNT7BP56706 349 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 TWF1Q12792 350 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 BIRC3Q13489 604 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 TDGQ13569 410 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 STIM1Q13586 685 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 VEPH1Q14D04 833 aa16.95■□□□□ 0.3
TSPAN4-201ENST00000346501 TAF12Q16514 161 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms