RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 C18orf25Q96B23 403 aaPredicted RBP14.27□□□□□ -0.13
HMGB1-202ENST00000339872 C11orf70Q9BRQ4 267 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 KLK14Q9P0G3 267 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 RNF14Q9UBS8 474 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 IPPQ9Y573 584 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 GRIN2DO15399 1336 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 SCN1AP35498 2009 aa14.27□□□□□ -0.13
HMGB1-202ENST00000339872 RPS6KA5O75582 802 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 MYBL1P10243 752 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 CD19P15391 556 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 RRM1P23921 792 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ORC1Q13415 861 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 PTGISQ16647 500 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ALKAL1Q6UXT8 129 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 PHLDB2Q86SQ0 1253 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ZNF784Q8NCA9 323 aaPredicted RBP14.26□□□□□ -0.13
HMGB1-202ENST00000339872 TFAP2BQ92481 460 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 PBKQ96KB5 322 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 BTBD6Q96KE9 485 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ZSWIM1Q9BR11 485 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 SENP6Q9GZR1 1112 aaPredicted RBP14.26□□□□□ -0.13
HMGB1-202ENST00000339872 RNF39Q9H2S5 420 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ARGLU1Q9NWB6 273 aaPredicted RBP14.26□□□□□ -0.13
HMGB1-202ENST00000339872 HMGXB4Q9UGU5 601 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ALG6Q9Y672 507 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 FRMPD3Q5JV73 1810 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 CES2O00748 559 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 GNRH1P01148 92 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 CHRNA1P02708 482 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 RNASE9P60153 205 aaKnown RBP14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ITIH3Q06033 890 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 MYO1EQ12965 1108 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 NFX1Q12986 1120 aaKnown RBP14.26□□□□□ -0.13
HMGB1-202ENST00000339872 MSANTD4Q8NCY6 345 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 PXYLP1Q8TE99 480 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 SELENOOQ9BVL4 669 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 CYP3A43Q9HB55 503 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 ADAM22Q9P0K1 906 aa14.26□□□□□ -0.13
HMGB1-202ENST00000339872 PPEF2O14830 753 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 CEP104O60308 925 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 STAU1O95793 577 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 THPOP40225 353 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 RAD23BP54727 409 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 ZBTB6Q15916 424 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 LIN9Q5TKA1 542 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 LLGL2Q6P1M3 1020 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 MMS22LQ6ZRQ5 1243 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 PHF13Q86YI8 300 aaPredicted RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 SMG8Q8ND04 991 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 C1orf131Q8NDD1 294 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 TWNKQ96RR1 684 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 PNKPQ96T60 521 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 AVENQ9NQS1 362 aaPredicted RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 ANAPC7Q9UJX3 599 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 ST3GAL5Q9UNP4 418 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 TLR3O15455 904 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 CILPO75339 1184 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 LSM8O95777 96 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 INHAP05111 366 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 CLCN6P51797 869 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 ACLYP53396 1101 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 ITGA7Q13683 1181 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 SMYD5Q6GMV2 418 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 PPP1R2P3Q6NXS1 205 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 RBM12Q9NTZ6 932 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 UBQLN1Q9UMX0 589 aaKnown RBP14.25□□□□□ -0.13
HMGB1-202ENST00000339872 PCDHGC3Q9UN70 934 aa14.25□□□□□ -0.13
HMGB1-202ENST00000339872 SMIM28A0A1B0GU29 152 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 DDX3YO15523 660 aaKnown RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 FKTNO75072 461 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 RPLP2P05387 115 aaKnown RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 PAEPP09466 180 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 COMTP21964 271 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 MGAT3Q09327 533 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 RPAINQ86UA6 219 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 SLC4A11Q8NBS3 891 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 TMEM35BQ8NCS4 154 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 WHAMMQ8TF30 809 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 ZNF296Q8WUU4 475 aaPredicted RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 ELOVL4Q9GZR5 314 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 NOD1Q9Y239 953 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 CEP83Q9Y592 693 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 MED7O43513 233 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 SPOPO43791 374 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 PTPN11Q06124 597 aaPredicted RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 C1QBPQ07021 282 aaKnown RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 C9orf57Q5W0N0 161 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 MTERF4Q7Z6M4 381 aaKnown RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 MMGT1Q8N4V1 131 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 USP38Q8NB14 1042 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 ARRDC4Q8NCT1 418 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 TMEM176AQ96HP8 235 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 VCPIP1Q96JH7 1222 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 TRMT13Q9NUP7 481 aaKnown RBP14.24□□□□□ -0.13
HMGB1-202ENST00000339872 SNX9Q9Y5X1 595 aa14.24□□□□□ -0.13
HMGB1-202ENST00000339872 MIF4GDA9UHW6 222 aaKnown RBP14.23□□□□□ -0.13
HMGB1-202ENST00000339872 PGRMC1O00264 195 aaKnown RBP14.23□□□□□ -0.13
HMGB1-202ENST00000339872 XPOTO43592 962 aaKnown RBP14.23□□□□□ -0.13
HMGB1-202ENST00000339872 CABYRO75952 493 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 KCNE1P15382 129 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms