RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SERPINI1Q99574 410 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 DCLK3Q9C098 648 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 TMEM39BQ9GZU3 492 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 ATF5Q9Y2D1 282 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 PTK7Q13308 1070 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 SH2D4BQ5SQS7 431 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 LBHD1Q9BQE6 289 aaPredicted RBP15.51■□□□□ 0.07
TCOF1-201ENST00000323668 MANSC1Q9H8J5 431 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 KCNQ5Q9NR82 932 aa15.51■□□□□ 0.07
TCOF1-201ENST00000323668 HSPA4LO95757 839 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 STAT5BP51692 787 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 CYP24A1Q07973 514 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 AUHQ13825 339 aaKnown RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 RPS6KA2Q15349 733 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 NLRP7Q8WX94 980 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 ALG3Q92685 438 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 SNX3O60493 162 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 APRTP07741 180 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 KDSRQ06136 332 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 SYCP2LQ5T4T6 812 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 NLRP9Q7RTR0 991 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 CEP120Q8N960 986 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 OR6B3Q8NGW1 331 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 SPATA18Q8TC71 538 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 PARD3BQ8TEW8 1205 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 HSD17B14Q9BPX1 270 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 ZC3H7BQ9UGR2 993 aaKnown RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 MAGED2Q9UNF1 606 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 NVLO15381 856 aaKnown RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 VIL1P09327 827 aaKnown RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 PRPSAP1Q14558 356 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 SMTNL2Q2TAL5 461 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 CASZ1Q86V15 1759 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 IDI2Q9BXS1 227 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 LRRC4Q9HBW1 653 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 EPS15L1Q9UBC2 864 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 GOLGA8QA0A0J9YX86 632 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 GOLGA8OA6NCC3 632 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 GOLGA8NF8WBI6 632 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 KIF3CO14782 793 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 PPP1R11O60927 126 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 SPAG6O75602 509 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 PSMD10O75832 226 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 HOXA10P31260 410 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 KCTD19Q17RG1 926 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 RSBN1LQ6PCB5 846 aaPredicted RBP15.5■□□□□ 0.07
TCOF1-201ENST00000323668 LRRC57Q8N9N7 239 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 CENPKQ9BS16 269 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 NIF3L1Q9GZT8 377 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 VPS11Q9H270 941 aa15.5■□□□□ 0.07
TCOF1-201ENST00000323668 ATXN2Q99700 1313 aaKnown RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 WEE2P0C1S8 567 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 CTCFP49711 727 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 ELF3P78545 371 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 TNFAIP2Q03169 654 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 CNGA2Q16280 664 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 EAPPQ56P03 285 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 HEATR6Q6AI08 1181 aaKnown RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 SLC9A9Q8IVB4 645 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 ACSF2Q96CM8 615 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 STAMBPL1Q96FJ0 436 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 CFLARO15519 480 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 KCNN4O15554 427 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 PDGFRAP16234 1089 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 MX2P20592 715 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 MARCKSL1P49006 195 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 DLG4P78352 724 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 MORF4L2Q15014 288 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 FSCBQ5H9T9 825 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 TEX9Q8N6V9 391 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 TEX13BQ9BXU2 312 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 CHST7Q9NS84 486 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 L3MBTL1Q9Y468 752 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 TISP43B9A030 160 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 PRKCBP05771 671 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 ENO1P06733 434 aaKnown RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 OSBPP22059 807 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 CDKL3Q8IVW4 592 aaPredicted RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 NSL1Q96IY1 281 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 ABCF3Q9NUQ8 709 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 NINJ2Q9NZG7 142 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 SETD1AO15047 1707 aaKnown RBP15.49■□□□□ 0.07
TCOF1-201ENST00000323668 NFIBO00712 420 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 MCL1Q07820 350 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 OVGP1Q12889 678 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 ACAP3Q96P50 834 aa15.49■□□□□ 0.07
TCOF1-201ENST00000323668 BRD2P25440 801 aaKnown RBP15.48■□□□□ 0.07
TCOF1-201ENST00000323668 CAP2P40123 477 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 PHKA2P46019 1235 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 GCNT1Q02742 428 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 ART3Q13508 389 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 TFDP3Q5H9I0 405 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.48■□□□□ 0.07
TCOF1-201ENST00000323668 ACP6Q9NPH0 428 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 B2RBV5 119 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 SNRPAP09012 282 aaKnown RBP15.48■□□□□ 0.07
TCOF1-201ENST00000323668 HMGCS2P54868 508 aa15.48■□□□□ 0.07
TCOF1-201ENST00000323668 MRPS35P82673 323 aaKnown RBP15.48■□□□□ 0.07
TCOF1-201ENST00000323668 DDX27Q96GQ7 796 aaKnown RBP15.48■□□□□ 0.07
TCOF1-201ENST00000323668 RSAD1Q9HA92 442 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms