RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 C1orf220Q5T0J3 134 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 WLSQ5T9L3 541 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 TMEM161BQ8NDZ6 487 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 CD101Q93033 1021 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 MIEF2Q96C03 454 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 NUDCD1Q96RS6 583 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 PPP1R12CQ9BZL4 782 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 AAASQ9NRG9 546 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 AGO2Q9UKV8 859 aaKnown RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 SCINQ9Y6U3 715 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 SRGAP2CP0DJJ0 459 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 CCND2P30279 289 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 RAD23BP54727 409 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 TAS2R40P59535 323 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 BASP1P80723 227 aaKnown RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 CENPCQ03188 943 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 TRPC3Q13507 836 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 CCNG2Q16589 344 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 SCYL3Q8IZE3 742 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 CNKSR2Q8WXI2 1034 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 TMEM143Q96AN5 459 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 POLR3FQ9H1D9 316 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 RBAKQ9NYW8 714 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 DNPEPQ9ULA0 475 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 USH1CQ9Y6N9 552 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 PDHA1P08559 390 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 OVGP1Q12889 678 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 PKN2Q16513 984 aaKnown RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 RBBP8NLQ8NC74 664 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 SYTL5Q8TDW5 730 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 MCEEQ96PE7 176 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 MSTO1Q9BUK6 570 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 FHDC1Q9C0D6 1143 aaPredicted RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 UBN1Q9NPG3 1134 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 DONSONQ9NYP3 566 aa11.11□□□□□ -0.63
COL3A1-202ENST00000317840 TNRC6CQ9HCJ0 1690 aaKnown RBP11.11□□□□□ -0.63
COL3A1-202ENST00000317840 BHMG1C9JSJ3 638 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 DKC1O60832 514 aaKnown RBP eCLIP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 DCTN3O75935 186 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 KRT19P08727 400 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MAPTP10636 758 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 PECAM1P16284 738 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 KRT4P19013 534 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SFNP31947 248 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 ERFP50548 548 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 KCTD2Q14681 263 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MUM1Q2TAK8 710 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SMTNL2Q2TAL5 461 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 ZBTB33Q86T24 672 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 APOBEC3FQ8IUX4 373 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 C4orf19Q8IY42 314 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 OLIG1Q8TAK6 271 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 NSUN6Q8TEA1 469 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 RBM41Q96IZ5 413 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 TMEM121Q9BTD3 319 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 GINM1Q9NU53 330 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 HOXC10Q9NYD6 342 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 ZFP69BQ9UJL9 534 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 KIF1CO43896 1103 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MTA2O94776 668 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 PHBP35232 272 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 BNIP1Q12981 228 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CRYMQ14894 314 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MTFR1Q15390 333 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 LVRNQ6Q4G3 990 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CRELD2Q6UXH1 353 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 FAM83AQ86UY5 434 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MAP4K3Q8IVH8 894 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 LMNTD2Q8IXW0 634 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MCPH1Q8NEM0 835 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 C7orf43Q8WVR3 580 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 PSPC1Q8WXF1 523 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SLC10A4Q96EP9 437 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 HERPUD2Q9BSE4 406 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MRIQ9BWK5 157 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MYLK2Q9H1R3 596 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CFAP69A5D8W1 941 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 NFKBIEO00221 500 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CBX6O95503 412 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 IREB2P48200 963 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 BACE1P56817 501 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 RNASELQ05823 741 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 NR1H3Q13133 447 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SIX1Q15475 284 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MIS18BP1Q6P0N0 1132 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 ECHDC2Q86YB7 292 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 RHPN2Q8IUC4 686 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MAGEC3Q8TD91 643 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SENP7Q9BQF6 1050 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CCDC134Q9H6E4 229 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 C10orf88Q9H8K7 445 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 PARVAQ9NVD7 372 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 SMCHD1A6NHR9 2005 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 MRPS9P82933 396 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 GCNT1Q02742 428 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 ZNF268Q14587 947 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 HIF1AQ16665 826 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 LONP2Q86WA8 852 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 C12orf56Q8IXR9 622 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms