RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 CYP2C9P11712 490 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 MLH1P40692 756 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 PAPOLAP51003 745 aaKnown RBP8.6□□□□□ -1.03
VPS41-202ENST00000310301 SEC24CP53992 1094 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 POU5F1BQ06416 359 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 DHX34Q14147 1143 aaKnown RBP8.6□□□□□ -1.03
VPS41-202ENST00000310301 MAPRE2Q15555 327 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 UBE2SQ16763 222 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 DEPDC1Q5TB30 811 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 CCNI2Q6ZMN8 369 aaPredicted RBP8.6□□□□□ -1.03
VPS41-202ENST00000310301 FRA10AC1Q70Z53 315 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 TTC13Q8NBP0 860 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 RNF25Q96BH1 459 aaPredicted RBP8.6□□□□□ -1.03
VPS41-202ENST00000310301 GPRASP2Q96D09 838 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 DUX4Q9UBX2 424 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 PCDHB7Q9Y5E2 793 aa8.6□□□□□ -1.03
VPS41-202ENST00000310301 ATP6V1B1P15313 513 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 VCPP55072 806 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 DMC1Q14565 340 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 IZUMO3Q5VZ72 239 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 E4F1Q66K89 784 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 APLFQ8IW19 511 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 SCG3Q8WXD2 468 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 NUP85Q9BW27 656 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 IRX2Q9BZI1 471 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 KLRG2A4D1S0 409 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 ZSCAN9O15535 394 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 SRGAP2CP0DJJ0 459 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 IFNA8P32881 189 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 PTGER2P43116 358 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 FLT3LGP49771 235 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CCZ1BP86790 482 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CCZ1P86791 482 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 IMPG1Q17R60 797 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 RSRC2Q7L4I2 434 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 HOMEZQ8IX15 550 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 ATP11CQ8NB49 1132 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 OR2W6PQ8NHA6 318 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 ZNF564Q8TBZ8 553 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 HEXIM2Q96MH2 286 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 DEFB118Q96PH6 123 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 YME1L1Q96TA2 773 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 TSSK1BQ9BXA7 367 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 KCNQ5Q9NR82 932 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 UTP6Q9NYH9 597 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 CICQ96RK0 1608 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 COL3A1P02461 1466 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 C10orf71Q711Q0 1435 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 GOLGA8RI6L899 631 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 M0R3G1 203 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 HSPA1AP0DMV8 641 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 HSPA1BP0DMV9 641 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 ATXN3P54252 364 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 STAT4Q14765 748 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 VEPH1Q14D04 833 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 LONRF1Q17RB8 773 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CCDC103Q8IW40 242 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 STAG2Q8N3U4 1231 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 C1orf54Q8WWF1 131 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CASP10Q92851 521 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 PRPF18Q99633 342 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 ADAM22Q9P0K1 906 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 GPR182O15218 404 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 LDHAP00338 332 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 QARSP47897 775 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 PPP6R3Q5H9R7 873 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 TJAP1Q5JTD0 557 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 AGBL2Q5U5Z8 902 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 LRRC31Q6UY01 552 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 ACER1Q8TDN7 264 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CNBD2Q96M20 576 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 MTRQ99707 1265 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 COQ7Q99807 217 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 RANBP17Q9H2T7 1088 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 RPF1Q9H9Y2 349 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 CDV3Q9UKY7 258 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 SNX12Q9UMY4 172 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CAB39Q9Y376 341 aaPredicted RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 HEY1Q9Y5J3 304 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 PARNO95453 639 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 PRKAR2AP13861 404 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 PTGISQ16647 500 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 RDM1Q8NG50 284 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 B4GALNT2Q8NHY0 566 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 INPP5DQ92835 1189 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 TMA16Q96EY4 203 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 SPATA17Q96L03 361 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 BRD8Q9H0E9 1235 aa8.59□□□□□ -1.03
VPS41-202ENST00000310301 CPSF3Q9UKF6 684 aaKnown RBP8.59□□□□□ -1.03
VPS41-202ENST00000310301 F5H423 210 aaPredicted RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 TBC1D4O60343 1298 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 CSPG5O95196 566 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 DLGAP3O95886 979 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 ACADSP16219 412 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SLC26A2P50443 739 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 NECTIN1Q15223 517 aa8.58□□□□□ -1.04
VPS41-202ENST00000310301 SMAD1Q15797 465 aaKnown RBP8.58□□□□□ -1.04
VPS41-202ENST00000310301 PFKFB3Q16875 520 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms