RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ARFGEF2Q9Y6D5 1785 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 LSP1P33241 339 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 RNF219Q5W0B1 726 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 CCDC149Q6ZUS6 474 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FGD2Q7Z6J4 655 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF341Q9BYN7 854 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 DDX56Q9NY93 547 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 CLRN2A0PK11 232 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 APBA3O96018 575 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 KRT16P08779 473 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 SLC1A1P43005 524 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 TP53BP2Q13625 1128 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FIGNQ5HY92 759 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 KIAA1841Q6NSI8 718 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 JCADQ9P266 1359 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF699Q32M78 642 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 KDM7AQ6ZMT4 941 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF473Q8WTR7 871 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 EMSYQ7Z589 1322 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 NRXN3Q9Y4C0 1643 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FAM47DPA6NHR8 397 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 GOLGA8RI6L899 631 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 STRNO43815 780 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 BNIP3LO60238 219 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 SNAP25P60880 206 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 OSTNP61366 133 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 C6orf10Q5SRN2 563 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 PRPF39Q86UA1 669 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 SLC35G2Q8TBE7 412 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 REEP2Q9BRK0 252 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ANKZF1Q9H8Y5 726 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 PLAGL2Q9UPG8 496 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 NFAT5O94916 1531 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 RNF103O00237 685 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FBXO33Q7Z6M2 555 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 HEATR4Q86WZ0 1026 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 AGPAT1Q99943 283 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 CARD9Q9H257 536 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 GOLGA8IPA6NC78 632 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 GOLGA8JA6NMD2 632 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TBX2Q13207 712 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ZFP42Q96MM3 310 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ISCUQ9H1K1 167 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 AIPL1Q9NZN9 384 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ZFATQ9P243 1243 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RP1P56715 2156 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM13O60858 407 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM49P0CI25 452 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM49CP0CI26 452 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ERP27Q96DN0 273 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 SEC16BQ96JE7 1060 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 IP6K2Q9UHH9 426 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TYK2P29597 1187 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RHPN2Q8IUC4 686 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 HPS3Q969F9 1004 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RNPEPQ9H4A4 650 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 AMACRQ9UHK6 382 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RHOBTB1O94844 696 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 AKR1B1P15121 316 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PRLRP16471 622 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ARSEP51690 589 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PEX3P56589 373 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF211Q13398 564 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 HEATR6Q6AI08 1181 aaKnown RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM65Q6PJ69 517 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 THTPAQ9BU02 230 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PPCSQ9HAB8 311 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 UVRAGQ9P2Y5 699 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 SMG5Q9UPR3 1016 aaKnown RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 NEMP1O14524 444 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 NLRP9Q7RTR0 991 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TCRBV5S4A2TA0A5A2 114 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PHF20L1A8MW92 1017 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ECE2O60344 883 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ASNSP08243 561 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RASA1P20936 1047 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 TMEM270Q6UE05 265 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ST13P5Q8NFI4 369 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 UNC45AQ9H3U1 944 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 EXOSC4Q9NPD3 245 aaKnown RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 C20orf96Q9NUD7 363 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 KBTBD4Q9NVX7 518 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 BFSP2Q13515 415 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 MFN1Q8IWA4 741 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 IL1RAPL1Q9NZN1 696 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 FAM107AO95990 144 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PSMA4P25789 261 aaKnown RBP10.32□□□□□ -0.76
COL6A3-201ENST00000295550 IZUMO3Q5VZ72 239 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 OR6P1Q8NGX9 317 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 SCFD1Q8WVM8 642 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 VPS50Q96JG6 964 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 PCDHGB4Q9UN71 923 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 CNTNAP4Q9C0A0 1308 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 RAD51CO43502 376 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 ACADSP16219 412 aa10.32□□□□□ -0.76
COL6A3-201ENST00000295550 APOL1O14791 398 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 CSTF3Q12996 717 aaKnown RBP10.31□□□□□ -0.76
COL6A3-201ENST00000295550 RHOT1Q8IXI2 618 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 MICU2Q8IYU8 434 aa10.31□□□□□ -0.76
COL6A3-201ENST00000295550 MTERF3Q96E29 417 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms