RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 SERPINB12Q96P63 405 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 LBHD1Q9BQE6 289 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 TMEM161AQ9NX61 479 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 GABBR1Q9UBS5 961 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ASAP1Q9ULH1 1129 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 TRAF7Q6Q0C0 670 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 PI16Q6UXB8 463 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 COL23A1Q86Y22 540 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ERBB3P21860 1342 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ASB14A6NK59 587 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 CLK1P49759 484 aaKnown RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 TRIP10Q15642 601 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 MAPRE1Q15691 268 aaKnown RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 TRIM16LQ309B1 348 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 GTF3C2Q8WUA4 911 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 MMP19Q99542 508 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ADAM30Q9UKF2 790 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 GEMIN4P57678 1058 aaKnown RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 PLOD1Q02809 727 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 SLC44A4Q53GD3 710 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 PPIL6Q8IXY8 311 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ADGRF4Q8IZF3 695 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 APPL2Q8NEU8 664 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 DBNDD1Q9H9R9 158 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 DPYDQ12882 1025 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 MTFR1Q15390 333 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 CYB5R4Q7L1T6 521 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 METTL16Q86W50 562 aaKnown RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 OXER1Q8TDS5 423 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 SPATA33Q96N06 139 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 SIKE1Q9BRV8 207 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 ISCUQ9H1K1 167 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 CATSPERBQ9H7T0 1116 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 DCP1AQ9NPI6 582 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 WHRNQ9P202 907 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 C6orf10Q5SRN2 563 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 KIF12Q96FN5 646 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 TRIM9Q9C026 710 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 FAM217BQ9NTX9 383 aaPredicted RBP8.34□□□□□ -1.07
LIMD1-201ENST00000273317 PCMTD2Q9NV79 361 aa8.34□□□□□ -1.07
LIMD1-201ENST00000273317 CLTCQ00610 1675 aaKnown RBP8.34□□□□□ -1.08
LIMD1-201ENST00000273317 USP27XA6NNY8 438 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 NDUFS3O75489 264 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 FDFT1P37268 417 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 LRRC14Q15048 493 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 TTC33Q6PID6 262 aaPredicted RBP8.34□□□□□ -1.08
LIMD1-201ENST00000273317 KDM7AQ6ZMT4 941 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 MAGEB18Q96M61 343 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 LRRC1Q9BTT6 524 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 RNF146Q9NTX7 359 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 SYBUQ9NX95 663 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 AMACRQ9UHK6 382 aa8.34□□□□□ -1.08
LIMD1-201ENST00000273317 UBA6A0AVT1 1052 aaPredicted RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 RFC5P40937 340 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SGSM1Q2NKQ1 1148 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 JAMLQ86YT9 394 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 MKNK1Q9BUB5 465 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 H2AFY2Q9P0M6 372 aaPredicted RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 MAGEA13PA6NCF6 341 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 VCPP55072 806 aaKnown RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 PTGISQ16647 500 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SIRT2Q8IXJ6 389 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 BNIP3LO60238 219 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 ERFP50548 548 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 PKN2Q16513 984 aaKnown RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 CXorf56Q9H5V9 222 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 PCDHA10Q9Y5I2 948 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 KANSL1LA0AUZ9 987 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 DGAT1O75907 488 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 TCF3P15923 654 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 RFX8Q6ZV50 586 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 PPP1R16BQ96T49 567 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 CCDC88CQ9P219 2028 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 TMEM120BA0PK00 339 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 AGRPO00253 132 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 ALBP02768 609 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 ANXA11P50995 505 aaKnown RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 NR1I3Q14994 352 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 CACHD1Q5VU97 1274 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 TTLL6Q8N841 843 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 CCDC126Q96EE4 140 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 IL17RAQ96F46 866 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SEC24DO94855 1032 aaPredicted RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 TRIM49P0CI25 452 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 TRIM49CP0CI26 452 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 YWHABP31946 246 aaKnown RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SERPINB8P50452 374 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SPDYAQ5MJ70 313 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 ZNF772Q68DY9 489 aaPredicted RBP8.33□□□□□ -1.08
LIMD1-201ENST00000273317 IQGAP1P46940 1657 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 LCP1P13796 627 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 XRRA1Q6P2D8 792 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 SPATA16Q9BXB7 569 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 CD274Q9NZQ7 290 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 USP17L15C9J2P7 530 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 USP17L10C9JJH3 530 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 USP17L13C9JLJ4 530 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 USP17L11C9JVI0 530 aa8.33□□□□□ -1.08
LIMD1-201ENST00000273317 USP17L18D6R9N7 530 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms