RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 TTC3P53804 2025 aa9.27□□□□□ -0.93
VPS4B-201ENST00000238497 NPTX2P47972 431 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 MRPS5P82675 430 aaKnown RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 BRD3Q15059 726 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 DDX42Q86XP3 938 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 HLA-CQ95604 372 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 ZBTB45Q96K62 511 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 BTBD6Q96KE9 485 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 COL25A1Q9BXS0 654 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TRIM6Q9C030 488 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 DDX47Q9H0S4 455 aaKnown RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 GANQ9H2C0 597 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 ADAMTS10Q9H324 1103 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 CLDND1Q9NY35 253 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 STK24Q9Y6E0 443 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TRANK1O15050 2925 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 LRRIQ3A6PVS8 624 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 LPXNO60711 386 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 PLS3P13797 630 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TCP1P17987 556 aaKnown RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 KCNQ1P51787 676 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 LAMTOR4Q0VGL1 99 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TJAP1Q5JTD0 557 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 PHLDB3Q6NSJ2 640 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 B3GNT9Q6UX72 402 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 PASD1Q8IV76 773 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 ARHGEF19Q8IW93 802 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TXLNBQ8N3L3 684 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 HELQQ8TDG4 1101 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 TCP11Q8WWU5 503 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 SAMD11Q96NU1 681 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 OLFML3Q9NRN5 406 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 NFU1Q9UMS0 254 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 H3BQF6 201 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 HEXIM1O94992 359 aaKnown RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 RFC5P40937 340 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 CDC42EP1Q00587 391 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 BEND6Q5SZJ8 279 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 IRF2BP2Q7Z5L9 587 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 CREG2Q8IUH2 290 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 KLHL23Q8NBE8 558 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 UHMK1Q8TAS1 419 aaKnown RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 DEPTORQ8TB45 409 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 NECAB3Q96P71 396 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 POLR3FQ9H1D9 316 aaPredicted RBP9.26□□□□□ -0.93
VPS4B-201ENST00000238497 AAASQ9NRG9 546 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 RGS18Q9NS28 235 aa9.26□□□□□ -0.93
VPS4B-201ENST00000238497 GBF1Q92538 1859 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SSU72P8A0A1W2PR75 194 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SMIM23A6NLE4 172 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 C9IYK1 514 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 NT5C1B-RDH14C9J2C7 533 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 DDX3XO00571 662 aaKnown RBP eCLIP9.25□□□□□ -0.932e-6■■□□□ 11.9
VPS4B-201ENST00000238497 PHKA2P46019 1235 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SNRNP35Q16560 246 aaKnown RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 AAK1Q2M2I8 961 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TCEAL5Q5H9L2 206 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 EPM2AIP1Q7L775 607 aaPredicted RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 EXOC8Q8IYI6 725 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 BSNDQ8WZ55 320 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TMEM161AQ9NX61 479 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 RWDD3Q9Y3V2 267 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 XIRP2A4UGR9 3374 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 FRMD3A2A2Y4 597 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 H3BNC9 293 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 KRIT1O00522 736 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 ZC3H11AO75152 810 aaKnown RBP eCLIP9.25□□□□□ -0.937e-6■■■■□ 20.8
VPS4B-201ENST00000238497 STBD1O95210 358 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 FTLP02792 175 aaPredicted RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 FECHP22830 423 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SOX5P35711 763 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 STRN3Q13033 797 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TFDP1Q14186 410 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TERF2Q15554 542 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 MAP9Q49MG5 647 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 PAPD7Q5XG87 772 aaKnown RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SPOPLQ6IQ16 392 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 MAATS1Q7Z4T9 603 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 POF1BQ8WVV4 589 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 PPP2R3CQ969Q6 453 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 MRPL38Q96DV4 380 aaKnown RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 THAP2Q9H0W7 228 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TMEM206Q9H813 350 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 ODF2LQ9ULJ1 636 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 K7ERI5 159 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 DGAT1O75907 488 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 ZRANB2O95218 330 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 MAPK7Q13164 816 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TIGD5Q53EQ6 642 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 AADACL2Q6P093 401 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 GLB1LQ6UWU2 654 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 ZNF410Q86VK4 478 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 ECHDC2Q86YB7 292 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SLC35G2Q8TBE7 412 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 NEK9Q8TD19 979 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 SP7Q8TDD2 431 aaPredicted RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TATDN2Q93075 761 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 CPB2Q96IY4 423 aa9.25□□□□□ -0.93
VPS4B-201ENST00000238497 TARS2Q9BW92 718 aaKnown RBP9.25□□□□□ -0.93
VPS4B-201ENST00000238497 APEX2Q9UBZ4 518 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms